hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21551513/chunk_1/iprscan-20080501-21551513.nocrc
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Query sequence: KIAA1262
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00435.11.fs Spectrin repeat                                 50.9    1.2e-14   8
PF00435.11.ls Spectrin repeat                                 22.3    0.00061   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00435.11.ls   1/5     128   232 ..     1   111 []     0.4    0.036
PF00435.11.ls   2/5     235   341 ..     1   111 []     9.8   0.0063
PF00435.11.ls   3/5     453   557 ..     1   111 []     3.2    0.021
PF00435.11.ls   4/5     666   772 ..     1   111 []     2.1    0.026
PF00435.11.ls   5/5     883   990 ..     1   111 []     6.8    0.011

Alignments of top-scoring domains:
PF00435.11.ls: domain 1 of 5, from 128 to 232: score 0.4, E = 0.036
                   *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk
                      l+  q  +  ++l++W ee+ + +++  ++   ++++q+Ll    H 
    KIAA1262   128    LNVVQ--SRFQELMEWAEEQQPNIAEALKQSPPPDMAQNLLM--DHL 170  

                   aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq
                   a+  el+a q  +++l   + a+++++d g  + + iq+ l++  ++  +
    KIAA1262   171 AICSELEAKQMLLKSLI--KDADRVMADLGLNERQVIQKALSDAQSHVNC 218  

                   LlelaaeRkqkLee<-*
                   L +l+ +R++ L     
    KIAA1262   219 LSDLVGQRRKYLNK    232  

PF00435.11.ls: domain 2 of 5, from 235 to 341: score 9.8, E = 0.0063
                   *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk
                       +  qF+  + +++s i++ e+ ++  ++ +  +++v    k   +k
    KIAA1262   235    SEKTQFLMAVFQATSQIQQHERKIMFREHICLLPDDVSKQVK--TCK 279  

                   aleaelaahqdrvealninelaekLiideg.hyaseeiqerleeLnerWe
                     +a l  +q  v  l   +++++L + e + ++  e+  +l+eL + ++
    KIAA1262   280 SAQASLKTYQNEVTGLW--AQGREL-MKEVtEQEKSEVLGKLQELQSVYD 326  

                   qLlelaaeRkqkLee<-*
                   ++l+ +  R q+Le    
    KIAA1262   327 SVLQKCSHRLQELEK    341  

PF00435.11.ls: domain 3 of 5, from 453 to 557: score 3.2, E = 0.021
                   *->lllqqFqrdaddlesWieek.ealL.ssedyegkdleevqaLlkqlk
                      l   ++++ ++  ++ ++e + ++L++s       +ee+ +L++   
    KIAA1262   453    LARKEYASLIELTTQSLSELeAQFLrMSKVPTDLAVEEALSLQD--G 497  

                   HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW
                   ++a+ +e+a++ + v++ln  +  e ++ ++++ ++    +++ +L +++
    KIAA1262   498 CRAILDEVAGLGEAVDELN--QKKEGFRSTGQPWQP----DKMLHLVTLY 541  

                   eqLlelaaeRkqkLee<-*
                    +L++++++R   Le+   
    KIAA1262   542 HRLKRQTEQRVSLLED    557  

PF00435.11.ls: domain 4 of 5, from 666 to 772: score 2.1, E = 0.026
                   *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk
                       +   Fq +++  + W++  +a Ls + y    l+++q+  +  k +
    KIAA1262   666    VQSIDFQTEMSRSLDWLRRVKAELSGPVYLDLNLQDIQEEIR--KIQ 710  

                   aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq
                    +++e++   + ++al   ++ ek+ + ++   s ++++ l+eL e+  +
    KIAA1262   711 IHQEEVQSSLRIMNALS-HKEKEKF-TKAKELISADLEHSLAELSELDGD 758  

                   LlelaaeRkqkLee<-*
                   ++e++ +R+++L e   
    KIAA1262   759 IQEALRTRQATLTE    772  

PF00435.11.ls: domain 5 of 5, from 883 to 990: score 6.8, E = 0.011
                   *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH
                       +++ +q+  +++ + ++++e+ Ls+  +  k+ ++ +a  k l+ H
    KIAA1262   883    AQWHDYQKAREEVIELMNDTEKKLSEFSL-LKTSSSHEAEEK-LsEH 927  

                   kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe
                   kal   ++   +++ al+  e a +L  ++++ +   ++  +  + +rW 
    KIAA1262   928 KALVSVVNSFHEKIVALE--EKASQLEKTGNDASKATLSRSMTTVWQRWT 975  

                   qLlelaaeRkqkLee<-*
                   +L++ a++ ++ Le+   
    KIAA1262   976 RLRAVAQDQEKILED    990  

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