HUGE

Gene/Protein Characteristic Table for KIAA1265

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00208
Accession No. :	AB033091
Description :	solute carrier family 39 (zinc transporter), member 10.
HUGO Gene Name :	solute carrier family 39 (zinc transporter), member 10 (SLC39A10)
Clone Name :	hj04493 [Vector Info]
Flexi ORF Clone :	pF1KA1265
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5231 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2657 bp

Genome contig ID gi89161199f_196130184
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
TATGGAACTCCTCCAAAATAAAGTTACTCAAAGAG
Flanking genome sequence
(180481 - 180530)
----+----*----+----*----+----*----+----*----+----*
AGCAAATATGCCAGTGTGTTTTCTTTAGTCTTTATTTCAGAACATTTCCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 2 f 196230184 196310663 10 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 835 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_515998	99.8	solute carrier ...	Pan troglodytes
XP_001085289	99.5	similar to solu...	Macaca mulatta
Q9ULF5	100.0	Zinc transporte...	Homo sapiens
CAH18673	99.9	hypothetical pr...	Homo sapiens
XP_001502432	92.8	solute carrier ...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
D31887	1.8e-23	31.2	KIAA0062

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003689 408 823 PF02535 Zinc/iron permease

ScanRegExp IPR007087 14 35 PS00028 Zinc finger

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003689	408	823	PF02535	Zinc/iron permease
ScanRegExp	IPR007087	14	35	PS00028	Zinc finger

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 11 TKFCLICLLTFIFHHCNHCHEE 32 SECONDARY 22

2 410 AWICGIISITVISLLSLLGVILV 432 PRIMARY 23

3 443 LLTFLVALAVGTMSGDALLHLLP 465 SECONDARY 23

4 497 DAVLKGLVALGGIYLLFIIEHCI 519 SECONDARY 23

5 691 AIGAAFSAGLTGGISTSIAVFCH 713 SECONDARY 23

6 738 YNLLSAMMAYIGMLIGTAVGQYA 760 PRIMARY 23

7 764 TLWIFAVTAGMFLYVALVDMLPE 786 PRIMARY 23

8 801 PVGQFILQNLGLLFGFAIMLVIA 823 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	11	TKFCLICLLTFIFHHCNHCHEE	32	SECONDARY	22
2	410	AWICGIISITVISLLSLLGVILV	432	PRIMARY	23
3	443	LLTFLVALAVGTMSGDALLHLLP	465	SECONDARY	23
4	497	DAVLKGLVALGGIYLLFIIEHCI	519	SECONDARY	23
5	691	AIGAAFSAGLTGGISTSIAVFCH	713	SECONDARY	23
6	738	YNLLSAMMAYIGMLIGTAVGQYA	760	PRIMARY	23
7	764	TLWIFAVTAGMFLYVALVDMLPE	786	PRIMARY	23
8	801	PVGQFILQNLGLLFGFAIMLVIA	823	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CATCTCATTGCTTGGCCCTTC

Primer_r
: AATGCAGAATCCTACCGTGGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CATCTCATTGCTTGGCCCTTC
Primer_r	: AATGCAGAATCCTACCGTGGG
PCR product length	: 165 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2657 bp
Genome contig ID	gi89161199f_196130184
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- TATGGAACTCCTCCAAAATAAAGTTACTCAAAGAG
Flanking genome sequence (180481 - 180530)	----+--------+--------+--------+--------+----* AGCAAATATGCCAGTGTGTTTTCTTTAGTCTTTATTTCAGAACATTTCCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	2	f	196230184	196310663	10	99.5	Perfect prediction

Gene/Protein Characteristic Table for KIAA1265

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information