# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh04440bmrp1.fasta.huge -Q ../query/KIAA1282.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1282, 1117 aa
 vs ./tmplib.24314 library

1986388 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.5155+/-0.0102; mu= -7.7610+/- 0.687
 mean_var=447.0756+/-107.367, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.060657

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1535  ( 711 res)   fk12792                     ( 711)  320 43.1 0.00018


>>KIAA1535  ( 711 res)   fk12792                          (711 aa)
 initn: 369 init1: 194 opt: 320  Z-score: 172.4  bits: 43.1 E(): 0.00018
Smith-Waterman score: 492;  25.130% identity (49.870% similar) in 768 aa overlap (229-902:1-704)

      200       210       220       230       240       250        
KIAA12 ANRRRSRAVLYHLSGHLQKQPKGKHKLNKGVFGEKPNLPEYKVAAIRKSPFILLH-CGAL
                                     ::: .  . : .   ....   ..:  . .
KIAA15                               VFGSHKAV-EIEQERVKSAGAWIIHPYSDF
                                              10        20         

       260       270       280       290        300       310      
KIAA12 RATWDGFILLATLYVAVTVPYSVCVSTAREPSAARGPP-SVCDLAVEVLFILDIVLNFRT
       :  :: ..::  :.:.  .   : ..  .: ..   ::  : ..  ...:.::.::::::
KIAA15 RFYWDLIMLL--LMVGNLIVLPVGITFFKEENS---PPWIVFNVLSDTFFLLDLVLNFRT
      30          40        50        60           70        80    

        320        330       340       350              360        
KIAA12 TFVSKSG-QVVFAPKSICLHYVTTWFLLDVIAALPFDLLHA-------FKVNVYFGAHLL
        .: . : ....::..:  .:. ::::.:.:...: : .         . ..::  :. :
KIAA15 GIVVEEGAEILLAPRAIRTRYLRTWFLVDLISSIPVDYIFLVVELEPRLDAEVYKTARAL
           90       100       110       120       130       140    

      370             380                   390        400         
KIAA12 KTVR------LLRLLRLLPRLDRY-SQY-----------SAVVLTL-LMAVFALLAHWVA
       . ::      :::::::  :: ::  :.           ::::  . :.... :: :: .
KIAA15 RIVRFTKILSLLRLLRL-SRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHWDG
          150       160        170       180       190       200   

     410       420       430       440       450       460         
KIAA12 CVWFYIGQREIESSESELPEIGWLQELARRLETPYYLVGRRPAGGNSSGQSDNCSSSSEA
       :. : . . .      ..:   :.        .  ..:.      .: :..         
KIAA15 CLQFLVPMLQ------DFPPDCWV--------SINHMVN------HSWGRQ---------
           210             220                     230             

     470       480       490       500       510       520         
KIAA12 NGTGLELLGGPSLRSAYITSLYFALSSLTSVGFGNVSANTDTEKIFSICTMLIGALMHAV
                       :  .:. :.: .  .:.:. .     .  ... .:..::  .:.
KIAA15 ----------------YSHALFKAMSHMLCIGYGQQAPVGMPDVWLTMLSMIVGATCYAM
                          240       250       260       270        

     530       540       550       560       570       580         
KIAA12 VFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLEYFQATWAVNNGIDTT
        .:..::.:: . . :  :. . .....:. .:..:   .::. ::..  .  .. .:  
KIAA15 FIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQ-GKMFDEE
      280       290       300       310       320       330        

     590       600       610        620       630       640        
KIAA12 ELLQSLPDELRADIAMHLHKE-VLQLPLFEAASRGCLRALSLALRPAFCTPGEYLIHQGD
        .:  : . :: .:     .  : ..:::  :. . . :.   ::     ::. ....:.
KIAA15 SILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGS
       340       350       360       370       380       390       

      650       660       670       680         690       700      
KIAA12 ALQALYFVCSGSMEVLKGGTVLAILGKGDLIG--CELPRREQVVKANADVKGLTYCVLQC
       . . .::.  : . ::  :.  . :  :. .:  : : : ...... ::    ::: :  
KIAA15 VGRKMYFIQHGLLSVLARGARDTRLTDGSYFGEICLLTRGRRTASVRAD----TYCRLYS
       400       410       420       430       440           450   

        710       720            730                 740           
KIAA12 LQLAGLHDSLALYPEFAPRF-----SRGLR-GELSYNL---------GAGGG--------
       :..  ..  :  .: .   :     .: :: :. .  :         :..::        
KIAA15 LSVDHFNAVLEEFPMMRRAFETVAMDRLLRIGKKNSILQRKRSEPSPGSSGGIMEQHLVQ
           460       470       480       490       500       510   

                      750       760                    770         
KIAA12 -----------SAEVDTSSLSGDNTLMSTLEEKETDG-------------EQGPTVSPAP
                   :    ..:::  .:   : .   ..             ..::   :  
KIAA15 HDRDMARGVRGRAPSTGAQLSGKPVLWEPLVHAPLQAAAVTSNVAIALTHQRGPL--PLS
           520       530       540       550       560         570 

     780       790       800          810       820        830     
KIAA12 ADEPSSPLLSPGCTSSSSAAKLLSPRRTAP---RPRLGGRGRPGRA-GALKAEAGPS---
        : :.. :   .  :..: :. : : :..:     :: .   :.:.  :  ..:: :   
KIAA15 PDSPATLLARSAWRSAGSPASPLVPVRAGPWASTSRLPA--PPARTLHASLSRAGRSQVS
             580       590       600       610         620         

              840         850       860       870       880        
KIAA12 --APPRALEGLRLPPM--PWNVPPDLSPRVVDGIEDGCGSDQPKFSFRVGQSG----PEC
         .:: .  : :: :   : ..     :. . :  ::  . .   : :.  ::    :  
KIAA15 LLGPPPGGGGRRLGPRGRPLSASQPSLPQRATG--DGSPGRKGTGSERLPPSGLLAKPPR
     630       640       650       660         670       680       

          890       900       910       920       930       940    
KIAA12 SSSPSPGPESGLLTVPHGPSEARNTDTLDKLRQAVTELSEQVLQMREGLQSLRQAVQLVL
       ...: : :     ..:.:                                          
KIAA15 TAQP-PRPPVPEPATPRGLQLSANM                                   
       690        700       710                                    




1117 residues in 1 query   sequences
1986388 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:16:04 2008 done: Thu Dec 18 15:16:04 2008
 Total Scan time:  0.700 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]