hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22280602/chunk_1/iprscan-20080501-22280602.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1282 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00520.21.fs Ion transport protein 87.8 3.5e-24 1 PF00520.21.ls Ion transport protein 89.6 8.7e-24 1 PF00027.19.fs Cyclic nucleotide-binding domain 46.4 9.6e-13 1 PF07885.6.fs Ion channel 40.7 2.1e-11 1 PF00027.19.ls Cyclic nucleotide-binding domain 48.3 2.4e-11 1 PF08447.1.fs PAS fold 32.0 3.4e-08 1 PF07885.6.ls Ion channel 36.9 6.7e-08 1 PF08447.1.ls PAS fold 34.0 4.8e-07 1 PF00989.14.fs PAS fold 22.2 3.2e-06 1 PF08448.1.fs PAS fold 21.9 1.9e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08448.1.fs 1/1 76 172 .. 18 123 .] 21.9 1.9e-05 PF00989.14.fs 1/1 76 167 .. 25 123 .] 22.2 3.2e-06 PF08447.1.fs 1/1 76 170 .. 1 100 [] 32.0 3.4e-08 PF08447.1.ls 1/1 76 170 .. 1 100 [] 34.0 4.8e-07 PF00520.21.ls 1/1 297 534 .. 1 224 [] 89.6 8.7e-24 PF00520.21.fs 1/1 297 534 .. 1 224 [] 87.8 3.5e-24 PF07885.6.ls 1/1 462 540 .. 1 81 [] 36.9 6.7e-08 PF07885.6.fs 1/1 486 540 .. 26 81 .] 40.7 2.1e-11 PF00027.19.ls 1/1 634 721 .. 1 98 [] 48.3 2.4e-11 PF00027.19.fs 1/1 634 721 .. 1 98 [] 46.4 9.6e-13 Alignments of top-scoring domains: PF08448.1.fs: domain 1 of 1, from 76 to 172: score 21.9, E = 1.9e-05 *->vryaNaaaslsaaerlfglppeellGktla.gellPpeledpdaarl v+y+ +++ l g++++e++ + +a l+ p+ + + KIAA1282 76 VVYCSDG----FCD-LTGFSRAEVMQRGCAcSFLYGPD----TSELV 113 eralrrvlegeepidfleelllpngeerhwelrlatPlrdpdGevigvlv ++++r++l++++ + +++l + +g + +++l + +P+ ++ Gev +lv KIAA1282 114 RQQIRKALDEHKEFKAELILYRKSGLPFWCLLDV-IPIKNEKGEVALFLV 162 isrDvTerrr<-* D++e + KIAA1282 163 SHKDISETKN 172 PF00989.14.fs: domain 1 of 1, from 76 to 167: score 22.2, E = 3.2e-06 *->ilyvNaaaeellGlsreeviGkslldlipeeddaec.lvaelllqal ++y+++ +++l+G+sr ev+ + + + ++ ++lv++++++al KIAA1282 76 VVYCSDGFCDLTGFSRAEVMQRGCACSFLYG-PDTSeLVRQQIRKAL 121 eqgee.rgvevsfrvsgqrflvrdgrpihvevraspvrdaggeilgflgv + e +++ + r+ g p+++++++ p+ +++ge+ fl+ KIAA1282 122 DEHKEfKAELILYRK--------SGLPFWCLLDVIPIKNEKGEVALFLVS 163 lrDi<-* ++Di KIAA1282 164 HKDI 167 PF08447.1.fs: domain 1 of 1, from 76 to 170: score 32.0, E = 3.4e-08 *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea ++y+s++f++++G+s++e+ + + l Pd e+vr+++++ KIAA1282 76 VVYCSDGFCDLTGFSRAEV--MQRGCACSFLYGPDTSELVRQQIRK- 119 lklkkgepysgeyRirrkdGeyrWveargrvirrDenGkpvrviGvavDI +l++ +++ e + rk G W +i+ +e G++ ++ ++DI KIAA1282 120 -ALDEHKEFKAELILYRKSGLPFWCLLDVIPIK-NEKGEVALFLVSHKDI 167 Ter<-* +e KIAA1282 168 SET 170 PF08447.1.ls: domain 1 of 1, from 76 to 170: score 34.0, E = 4.8e-07 *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea ++y+s++f++++G+s++e+ + + l Pd e+vr+++++ KIAA1282 76 VVYCSDGFCDLTGFSRAEV--MQRGCACSFLYGPDTSELVRQQIRK- 119 lklkkgepysgeyRirrkdGeyrWveargrvirrDenGkpvrviGvavDI +l++ +++ e + rk G W +i+ +e G++ ++ ++DI KIAA1282 120 -ALDEHKEFKAELILYRKSGLPFWCLLDVIPIK-NEKGEVALFLVSHKDI 167 Ter<-* +e KIAA1282 168 SET 170 PF00520.21.ls: domain 1 of 1, from 297 to 534: score 89.6, E = 8.7e-24 *->ildyvftviFtlEmllkiialgfklhsr........iafkYlrspwN ++d+++ v+F+l+++l+++ + f+++s + +++i ++Y+++++ KIAA1282 297 VCDLAVEVLFILDIVLNFR-TTFVSKSGqvvfapksICLHYVTTWFL 342 ilDflvvlpslislilsllgggsegdlyvreskdstlsegspgllsvlrl lD+++ lp+++ +++ ++++ + l KIAA1282 343 -LDVIAALPFDLLHAFKV------------------------NVYFGAHL 367 lRllRvLRllrlirrapglfRWelrtlWelnslgrslksllnvlllllll l ++R llrl+r+ p+ l ++ +s l ++ +++ll KIAA1282 368 LKTVR---LLRLLRLLPR-----LDRY-----SQYSAVVLTLLMAVFALL 404 lfiFaiigvqlFggklnkcc.............................. +++ a++++++ + ++++ ++ ++ + +++ + + ++ KIAA1282 405 AHWVACVWFYIGQREIESSEselpeigwlqelarrletpyylvgrrpagg 454 ....................npingntnFdsfgnaflwlFqtmTteGwgd ++++ +++++++++ ++++ + +g++ + +++++++++ ++T++G+g+ KIAA1282 455 nssgqsdncsssseangtglELLGGPSLRSAYITSLYFALSSLTSVGFGN 504 vmpdtlagtvlgyiyfvsfiilgsflllNLfiavi<-* v ++ t+ ++i+ + +++g+ l+ +++++++ KIAA1282 505 VSAN----TDTEKIFSICTMLIGA-LMHAVVFGNV 534 PF00520.21.fs: domain 1 of 1, from 297 to 534: score 87.8, E = 3.5e-24 *->ildyvftviFtlEmllkiialgfklhsr........iafkYlrspwN ++d+++ v+F+l+++l+++ + f+++s + +++i ++Y+++++ KIAA1282 297 VCDLAVEVLFILDIVLNFR-TTFVSKSGqvvfapksICLHYVTTWFL 342 ilDflvvlpslislilsllgggsegdlyvreskdstlsegspgllsvlrl lD+++ lp+++ +++ ++++ + l KIAA1282 343 -LDVIAALPFDLLHAFKV------------------------NVYFGAHL 367 lRllRvLRllrlirrapglfRWelrtlWelnslgrslksllnvlllllll l ++R llrl+r+ p+ l ++ +s l ++ +++ll KIAA1282 368 LKTVR---LLRLLRLLPR-----LDRY-----SQYSAVVLTLLMAVFALL 404 lfiFaiigvqlFggklnkcc.............................. +++ a++++++ + ++++ ++ ++ + +++ + + ++ KIAA1282 405 AHWVACVWFYIGQREIESSEselpeigwlqelarrletpyylvgrrpagg 454 ....................npingntnFdsfgnaflwlFqtmTteGwgd ++++ +++++++++ ++++ + +g++ + +++++++++ ++T++G+g+ KIAA1282 455 nssgqsdncsssseangtglELLGGPSLRSAYITSLYFALSSLTSVGFGN 504 vmpdtlagtvlgyiyfvsfiilgsflllNLfiavi<-* v ++ t+ ++i+ + +++g+ l+ +++++++ KIAA1282 505 VSAN----TDTEKIFSICTMLIGA-LMHAVVFGNV 534 PF07885.6.ls: domain 1 of 1, from 462 to 540: score 36.9, E = 6.7e-08 *->iilllvlifgtvyyal.epeegwewsfldalYFsfvTlTTiGYGDiv + + gt + +l++p+ ++++lYF++ +lT +G+G+++ KIAA1282 462 NCSSSSEANGTGLELLgGPSLRS--AYITSLYFALSSLTSVGFGNVS 506 PlstdaGRlftivyiliGiplfalllavlgrflte<-* td+ ++f+i+ +liG + a+++++++ +++ KIAA1282 507 AN-TDTEKIFSICTMLIGALMHAVVFGNVTAIIQR 540 PF07885.6.fs: domain 1 of 1, from 486 to 540: score 40.7, E = 2.1e-11 *->fldalYFsfvTlTTiGYGDivPlstdaGRlftivyiliGiplfalll ++++lYF++ +lT +G+G+++ td+ ++f+i+ +liG + a+++ KIAA1282 486 YITSLYFALSSLTSVGFGNVSAN-TDTEKIFSICTMLIGALMHAVVF 531 avlgrflte<-* ++++ +++ KIAA1282 532 GNVTAIIQR 540 PF00027.19.ls: domain 1 of 1, from 634 to 721: score 48.3, E = 2.4e-11 *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp + + +Ge+++++Gd+ + lY+v sG+++v k++ ilg+ KIAA1282 634 PAFCTPGEYLIHQGDALQALYFVCSGSMEVLKgGTVLA-----ILGK 675 GdffGelallggendspSrhaprsatvvAltdsellvipredflelleed Gd++G ++ ++++ a+v+ lt ++l ++ + +++ l+ + KIAA1282 676 GDLIGCELPRREQ------VVKANADVKGLTYCVLQCLQLAGLHDSLALY 719 pe<-* pe KIAA1282 720 PE 721 PF00027.19.fs: domain 1 of 1, from 634 to 721: score 46.4, E = 9.6e-13 *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp + + +Ge+++++Gd+ + lY+v sG+++v k++ ilg+ KIAA1282 634 PAFCTPGEYLIHQGDALQALYFVCSGSMEVLKgGTVLA-----ILGK 675 GdffGelallggendspSrhaprsatvvAltdsellvipredflelleed Gd++G ++ ++++ a+v+ lt ++l ++ + +++ l+ + KIAA1282 676 GDLIGCELPRREQ------VVKANADVKGLTYCVLQCLQLAGLHDSLALY 719 pe<-* pe KIAA1282 720 PE 721 //