# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh13551mrp1.fasta.huge -Q ../query/KIAA1288.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1288, 1245 aa vs ./tmplib.24314 library 1986260 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.9703+/-0.0078; mu= -7.3361+/- 0.523 mean_var=418.6472+/-103.266, 0's: 0 Z-trim: 9 B-trim: 0 in 0/40 Lambda= 0.062683 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0774 ( 1381 res) bh00283 (1381) 854 92.9 3.7e-19 >>KIAA0774 ( 1381 res) bh00283 (1381 aa) initn: 811 init1: 401 opt: 854 Z-score: 435.7 bits: 92.9 E(): 3.7e-19 Smith-Waterman score: 854; 32.192% identity (64.041% similar) in 584 aa overlap (680-1245:816-1381) 650 660 670 680 690 700 KIAA12 SMEKQELKQEIMNETFEYGSLFLGSASKTTTTSGRNISKPDSCGLRQIAAPKA-KVGPPV ::. :. : :.. .. .: : . : KIAA07 AMSRLPSAKSRILIASQRSSASAIHPPGPITTATSLYSSDPSADLKKASSSNAAKSNLPK 790 800 810 820 830 840 710 720 730 740 750 760 KIAA12 SCLRRNSDNRNPSADRAVSPQRIRRVSSSGKPTSLKTAQSSWVNLPRPLPKSK-ASLKSP : :: . .: :.: :. . : :: .. .: ....:. . :: .: .. ..: KIAA07 SGLRPPGYSRLPAAKLAAFG--FVRSSSVSSVSSTQSGDSAQPEQGRPATRSTFGNEEQP 850 860 870 880 890 900 770 780 790 800 810 820 KIAA12 ALRRTGSTPSIASTHSELSTYSNNSGNAAVIKYEEKPPKPAFQNGSSGSFYLKPLVSRAH .:. .: :: .: . . . ...... . : : . .:. : . .. KIAA07 VLK--ASLPS-KDTPKGAGRVAPPASSSVTAPRRSLLPAPKSTSTPAGTKKDAPKDQDTN 910 920 930 940 950 960 830 840 850 860 870 880 KIAA12 VHLMKTPPK-GPSRKNLFTALNAVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTK ...: . . : .: . . :.: :. . :. :.: :. : : . : . KIAA07 KPAVSSPKRVAASTTKLHSP--GYPKQRTAAARN-GFPPKPDPQAREAERQLVL-RLKER 970 980 990 1000 1010 890 900 910 920 930 940 KIAA12 CENQS---GFIL-QLKQLLACGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVNLRGE ::.:. : .::. . :: :.::.:. ::.. . : :: ..: :: ::.:.: : KIAA07 CEQQTRQLGVAQGELKRAI-CG---FDALAVATQHFFRKNESALVKEKELSIELANIRDE 1020 1030 1040 1050 1060 1070 950 960 970 980 990 KIAA12 LVTASTTCEKLEKARNELQTVYEAFVQ----QHQAEKTERENRLKEFYTREYEKLRDTYI .. .. ::::.: ..::. .: :. :.::: : :.::. . :. .:.. . KIAA07 VAFHTAKCEKLQKEKEELERRFEDEVKRLGWQQQAELQELEERLQLQFEAEMARLQEEHG 1080 1090 1100 1110 1120 1130 1000 1010 1020 1030 1040 1050 KIAA12 EEAEKYKMQLQEQFDNLNAAHETSKLEIEASHSEKLELLKKAYEASLSEIKKGHEIEKKS .. . . : ::: ..:.:.:... ::.: .:. . .:. .. ...:. . ::.::: KIAA07 DQLLSIRCQHQEQVEDLTASHDAALLEMENNHTVAITILQDDHDHKVQELMSTHELEKKE 1140 1150 1160 1170 1180 1190 1060 1070 1080 1090 1100 1110 KIAA12 LEDLLSEKQESLEKQINDLKSENDALNEKLKSEEQ--KRRAREKANLKNPQIMYLEQELE ::. . . . ::. :.. : ....: .. . :. .. ..:. .. ..::.... KIAA07 LEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIALAPYQHLEEDMK 1200 1210 1220 1230 1240 1250 1120 1130 1140 1150 1160 1170 KIAA12 SLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAISRQ ::: :::.::...:.:. :....:::...: : .:.. .::.::.::::.:.. ...:: KIAA07 SLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQ 1260 1270 1280 1290 1300 1310 1180 1190 1200 1210 1220 1230 KIAA12 LSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSP-KRSPTSSAIPLQSPRNSG :: :.: ::: .:::.. .:::: ::::::::..:: :: : :::: :. :.:. KIAA07 LSEENANLQEYVEKETQEKKRLSRTNEELLWKLQTGDPTSPIKLSPTS---PVY--RGSS 1320 1330 1340 1350 1360 1240 KIAA12 SFPS-P---SISPR : :: : : .:: KIAA07 SGPSSPARVSTTPR 1370 1380 1245 residues in 1 query sequences 1986260 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:18 2008 done: Thu Dec 18 15:16:19 2008 Total Scan time: 0.760 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]