hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22395396/chunk_1/iprscan-20080501-22395396.nocrc
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Query sequence: KIAA1289
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00179.16.ls Ubiquitin-conjugating enzyme                   155.0    1.9e-43   1
PF00179.16.fs Ubiquitin-conjugating enzyme                   153.0    7.1e-43   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00179.16.fs   1/1    2513  2671 ..     1   165 []   153.0  7.1e-43
PF00179.16.ls   1/1    2513  2671 ..     1   165 []   155.0  1.9e-43

Alignments of top-scoring domains:
PF00179.16.fs: domain 1 of 1, from 2513 to 2671: score 153.0, E = 7.1e-43
                   *->RLqkElkelektelqkdpppgisagpvddadgpnnlfeWevtIiGPe
                      RL++E       +l+++ p + s  +    d++ +l++++v+I+GP+
    KIAA1289  2513    RLAQEAV-----TLSTSLPLSSSSSVFVRCDEE-RLDIMKVLITGPA 2553 

                   gTpYeGGvFkldieFPedYPfkPPkvkFtT.....kiyHPNVdspsGeiC
                   +TpY++G+F++d++FP+dYP +PP v  +T+++++ +++PN +  +G +C
    KIAA1289  2554 DTPYANGCFEFDVYFPQDYPSSPPLVNLETtgghsVRFNPNLY-NDGKVC 2602 

                   LdILkPGDDpgYEaderd.d.evWsP.altvrsvLlsiqsLLL.sePyNp
                   L+IL+         +++++++e+W+P++ +  +vL+s+qsL+L +ePy +
    KIAA1289  2603 LSILN---------TWHGrPeEKWNPqTSSFLQVLVSVQSLILvAEPYFN 2643 

                   esPlnaeaAklyken.reefkkrvrerv<-*
                   e +++   ++   + + +e++ ++r  +   
    KIAA1289  2644 EPGYERSRGTPSGTQsSREYDGNIRQAT    2671 

PF00179.16.ls: domain 1 of 1, from 2513 to 2671: score 155.0, E = 1.9e-43
                   *->RLqkElkelektelqkdpppgisagpvddadgpnnlfeWevtIiGPe
                      RL++E       +l+++ p + s  +    d++ +l++++v+I+GP+
    KIAA1289  2513    RLAQEAV-----TLSTSLPLSSSSSVFVRCDEE-RLDIMKVLITGPA 2553 

                   gTpYeGGvFkldieFPedYPfkPPkvkFtT.....kiyHPNVdspsGeiC
                   +TpY++G+F++d++FP+dYP +PP v  +T+++++ +++PN +  +G +C
    KIAA1289  2554 DTPYANGCFEFDVYFPQDYPSSPPLVNLETtgghsVRFNPNLY-NDGKVC 2602 

                   LdILkPGDDpgYEaderd.d.evWsP.altvrsvLlsiqsLLL.sePyNp
                   L+IL+         +++++++e+W+P++ +  +vL+s+qsL+L +ePy +
    KIAA1289  2603 LSILN---------TWHGrPeEKWNPqTSSFLQVLVSVQSLILvAEPYFN 2643 

                   esPlnaeaAklyken.reefkkrvrerv<-*
                   e +++   ++   + + +e++ ++r  +   
    KIAA1289  2644 EPGYERSRGTPSGTQsSREYDGNIRQAT    2671 

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