# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk05468mrp1.fasta.huge -Q ../query/KIAA1292.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1292, 595 aa vs ./tmplib.24314 library 1986910 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.7068+/-0.0102; mu= -7.8676+/- 0.686 mean_var=544.4014+/-129.709, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.054969 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1748 ( 758 res) pj02084 ( 758) 365 43.6 7.1e-05 >>KIAA1748 ( 758 res) pj02084 (758 aa) initn: 892 init1: 362 opt: 365 Z-score: 179.4 bits: 43.6 E(): 7.1e-05 Smith-Waterman score: 1060; 37.269% identity (54.339% similar) in 703 aa overlap (1-595:122-758) 10 20 30 KIAA12 DEDKEDDFRAPLYKNVDVRGIQVRMKWCAT ::::::::::::::.:...::::::::::: KIAA17 IYNAIMFLFVLANFSMATFMDPGIFPRAEEDEDKEDDFRAPLYKTVEIKGIQVRMKWCAT 100 110 120 130 140 150 40 50 KIAA12 CHFYRPPRCSHCSVCDNCVE---------------------------------------- :.:::::::::::::::::: KIAA17 CRFYRPPRCSHCSVCDNCVEEFDHHCPWVNNCIGRRNYRYFFLFLLSLTAHIMGVFGFGL 160 170 180 190 200 210 KIAA12 ----------------------------------------------------VTGKFRGG :::::::: KIAA17 LYVLYHIEELSGVRTAVTMAVMCVAGLFFIPVAGLTGFHVVLVARGRTTNEQVTGKFRGG 220 230 240 250 260 270 60 70 80 90 100 110 KIAA12 VNPFTRGCCGNVEHVLCSPLAPRYVVEPPRLPLAVSLKPPFLRPELLDRAAPLKVKLSDN ::::: :::.:: .:::: ::::. .: . : ..:::::::. : . . ::. :: KIAA17 VNPFTNGCCNNVSRVLCSSPAPRYLGRPKKEKTIV-IRPPFLRPEVSD--GQITVKIMDN 280 290 300 310 320 120 130 140 150 160 170 KIAA12 GLKAGLGRSKSKGSLDRLDEKPLDLGPPLPPKIEAGTFSSDLQTPRP-GSAESALSVQRT :... : :.::::::. . . : :: ::: . . ... :.: .. :.. . . KIAA17 GIQGELRRTKSKGSLEITESQSADAEPPPPPKPDLSRYTG-LRTHLGLATNEDSSLLAKD 330 340 350 360 370 380 180 190 200 210 220 230 KIAA12 SPPTPAMYKFRPAFP---TGPKVPFCGPGEQVPGPDSL---TLGDDNIRSLDFVSEPSLD :::::.:::.::.. :. .: . .. : ::: : .. : .. :::::. KIAA17 SPPTPTMYKYRPGYSSSSTSAAMPHSSSAKLSRG-DSLKEPTSIAESSRHPSYRSEPSLE 390 400 410 420 430 440 240 250 260 270 280 KIAA12 LPDYGPGGLHAAYPPSPPLSAS---DAFSGALRSLSLKASSRRGGDHVALQPLRSEGGPP : ... :: .. : : .:.. :: :::... : . :: .:::: KIAA17 -----PESFR-----SPTFGKSFHFDPLSSGSRSSSLKSAQGTGFELGQLQSIRSEGTTS 450 460 470 480 490 290 300 310 320 330 340 KIAA12 TPHRSIFAPHALPNRNGSLSYDSLLNPG-SPGGHACPAHPAVGVA-GYHSPYLHPG-ATG : ..:. : .:::::::::::.:. :: .. : : :: ::.: : KIAA17 TSYKSL----ANQTRNGSLSYDSLLTPSDSPDFESVQAGPEPDPPLGYTSPFLSARLAQQ 500 510 520 530 540 550 350 360 370 380 390 400 KIAA12 DPPRPLPRSFSPVLGPRPREPSPVRYDNLSRTIMASIQER-KDREERERLLRSQADSLFG . :: . :. :: ::::::::::::: :.::.::: : .. : . . .: KIAA17 REAERHPR-LVPT-GPTHREPSPVRYDNLSRHIVASLQEREKLLRQSPPLPGREEEPGLG 560 570 580 590 600 610 410 420 430 440 450 460 KIAA12 DSGVYDAPSSYSLQQASVLSEGPRGPALRYGSRDDLVAGPGFGGARNPALQTSLSSLSSS :::. ..:.: ...:: . : :: . :.: .: :. KIAA17 DSGIQSTPGS---------GHAPRTSS----SSDD--------SKRSPLGKTPLGR---- 620 630 640 470 480 490 500 510 520 KIAA12 VSRAPRTSS-SSLQADQASSNAPGPR-PSSGSHRSPARQGLPSPPGTPHSPSYAGPKAVA .:: .. ..:.. ..: ::: : : :: . .. . ::. .. . :: KIAA17 -PAVPRFGKPDGLRGRGVGSPEPGPTAPYLG--RSMSYSSQKAQPGVSET------EEVA 650 660 670 680 690 530 540 550 560 570 580 KIAA12 FIHTDLPEPPPSLTVQRDHPQLKTPPSKLNGQSPGLARLGPATGPPGPSASPTRHTLVKK . .: : . .:. :::: :: ::: .:. .:. : : : .:::: ::: KIAA17 L------QP---LLTPKDEVQLKTTYSKSNGQPKSLGSASPGPGQP-PLSSPTRGG-VKK 700 710 720 730 740 590 KIAA12 VSGVGGTTYEISV ::::::::::::: KIAA17 VSGVGGTTYEISV 750 595 residues in 1 query sequences 1986910 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:28 2008 done: Thu Dec 18 15:16:29 2008 Total Scan time: 0.500 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]