# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg01760.fasta.huge -Q ../query/KIAA1295.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1295, 550 aa vs ./tmplib.24314 library 1986955 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 11.4460+/-0.0107; mu= -13.9712+/- 0.728 mean_var=487.1615+/-116.851, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.058108 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0418 ( 989 res) hh00988 ( 989) 400 48.0 4e-06 >>KIAA0418 ( 989 res) hh00988 (989 aa) initn: 603 init1: 346 opt: 400 Z-score: 201.8 bits: 48.0 E(): 4e-06 Smith-Waterman score: 593; 27.493% identity (50.142% similar) in 702 aa overlap (1-549:298-988) 10 20 30 KIAA12 KPPIPPQVEEEYYTIAEFQTTIPDGISFQA ::: ::.:: :::::::::. : :::::.. KIAA04 IAPQRAQISSPNLRTRPPPRRESSLGFQLPKPPEPPSVEVEYYTIAEFQSCISDGISFRG 270 280 290 300 310 320 40 50 60 70 80 KIAA12 GLKVEVIEKNLSGWWYIQIEDKEGWAPATFIDKYKK------TSNASRPNFLAPLP-HEV : :.:::.:: .::::.:: .:::::::..::: :: ::. .::. : : . KIAA04 GQKAEVIDKNSGGWWYVQIGEKEGWAPASYIDKRKKPNLSRRTSTLTRPKVPPPAPPSKP 330 340 350 360 370 380 90 100 110 120 130 140 KIAA12 TQLRLGEAAALENNTGSEATGPSRPLPDAPHGVMDSGLPWSKDWKGSKDVLRKASSDMSA . . : ..: :.. . . .: : : .:: :.. : .::.. KIAA04 KEAEEGPTGASESQDSPRKLKYEEPEYDIPAFGFDSEPELSEE-----PVEDRASGERRP 390 400 410 420 430 440 150 160 170 180 190 KIAA12 SAGYEEISDPDMEE-KPSLPPRKESIIKSEGELLERERERQRTEQL---RGPT--PKPPG . .. .... . .. .:.. : . : : : .:. :: . :: KIAA04 AQPHRPSPASSLQRARFKVGESSEDVALEEETIYENEGFRPYAEDTLSARGSSGDSDSPG 450 460 470 480 490 500 200 210 220 230 240 KIAA12 VILPMMPAKHIPPA---RDSRRPEPKPDKSRLFQL-KNDMGLECGHKVLAKEV----KKP . :. : . ..: . : .:. .. :: . . .. . . .. KIAA04 SSSLSLTRKNSPKSGSPKSSSLLKLKAEKNAQAEMGKNHSSASFSSSITINTTCCSSSSS 510 520 530 540 550 560 250 260 270 280 290 KIAA12 NLRPISKSKTDL-PEEKPDA----TPQ---------NPFLKSRPQVRPKPAPSP--KTEP . .::.. :: :. :: ::. : : : :...:. :.: . KIAA04 SSSSLSKTSGDLKPRSASDAGIRGTPKVRAKKDADANAGLTSCPRAKPSVRPKPFLNRAE 570 580 590 600 610 620 300 310 320 330 340 KIAA12 PQGEDQVDICNLRSKLRP----------AKSQDKSL---LDGEGPQAVGGQDVAFSRSFL :.....:: .:: .::: .::.:. : .:.:. :.. . . : KIAA04 SQSQEKMDISTLRRQLRPTGQLRGGLKGSKSEDSELPPQTASEAPSE-GSRRSSSDLITL 630 640 650 660 670 680 350 KIAA12 PG-----------EGPG----------RAQD------------------------RTGKQ :. :::. ..:: : :. KIAA04 PATTPPCPTKKEWEGPATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGEL 690 700 710 720 730 740 360 370 380 390 KIAA12 DGLSPKE---ISCRAPPRPA-KTTDPV--------SKSVPVP--------LQEAPQQRPV .: .:.. .. : :. : : : .:: . :. . :.. . KIAA04 EGWAPSHYLVLDENEQPDPSGKELDTVPAKGRQNEGKSDSLEKIERRVQALNTVNQSKKA 750 760 770 780 790 800 400 410 420 430 440 KIAA12 VPPRRPPPPKKTSSSSRPLPEVRGPQCEGHESRAAPTPGRALLVPPKAKPFLS------N .:: :: ...: : :. .. ..: : ... :: :: . KIAA04 TPPIPSKPPGGFGKTS-GTPAVK---MRNGVRQVAVRPQSVFVSPPPKDNNLSCALRRNE 810 820 830 840 850 450 460 470 480 KIAA12 SLGGQDDTRGKGSLGPWGTGKI------GENREKAAAA------------SVPNA----- :: . : :: . ..:.. :. :.::. :.: . KIAA04 SLTATDGLRGVRRNSSFSTARSAAAEAKGRLAERAASQGSDSPLLPAQRNSIPVSPVRPK 860 870 880 890 900 910 490 500 510 520 530 KIAA12 ---------DGLKDSLYVAVADFEGDKDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSW ..::: .::..::.:::..:..::::. .:: :.: .:::.::.:.:. . KIAA04 PIEKSQFIHNNLKD-VYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPF 920 930 940 950 960 970 540 550 KIAA12 EGWIPSNYLRKKP .::.:::::.:: KIAA04 KGWVPSNYLEKKN 980 550 residues in 1 query sequences 1986955 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:35 2008 done: Thu Dec 18 15:16:35 2008 Total Scan time: 0.480 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]