hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22503186/chunk_1/iprscan-20080501-22503186.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1295
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00018.18.fs SH3 domain                                      62.1    3.2e-16   2
PF00018.18.ls SH3 domain                                      62.9    9.4e-16   2
PF07653.7.fs Variant SH3 domain                              38.7    1.6e-10   2
PF07653.7.ls Variant SH3 domain                              41.4    2.9e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00018.18.fs   1/2      10    64 ..     1    59 []    33.7    2e-08
PF00018.18.ls   1/2      10    64 ..     1    59 []    35.6  1.6e-07
PF07653.7.ls   1/2      11    64 ..     1    69 []    18.5    0.004
PF00018.18.ls   2/2     492   549 ..     1    59 []    27.3  2.6e-05
PF07653.7.ls   2/2     493   549 ..     1    69 []    22.9    0.001
PF00018.18.fs   2/2     508   549 ..    18    59 .]    28.5  5.3e-07

Alignments of top-scoring domains:
PF00018.18.fs: domain 1 of 2, from 10 to 64: score 33.7, E = 2e-08
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                      + +  +  ++ + +d +sF+ G +++v+ek+ + gWW+ +     +k
    KIAA1295    10    EEYYTIAEFQTTIPDGISFQAGLKVEVIEKNLS-GWWYIQIE---DK 52   

                   eGliPsNYVepv<-*
                   eG+ P+++++++   
    KIAA1295    53 EGWAPATFIDKY    64   

PF00018.18.ls: domain 1 of 2, from 10 to 64: score 35.6, E = 1.6e-07
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                      + +  +  ++ + +d +sF+ G +++v+ek+ + gWW+ +     +k
    KIAA1295    10    EEYYTIAEFQTTIPDGISFQAGLKVEVIEKNLS-GWWYIQIE---DK 52   

                   eGliPsNYVepv<-*
                   eG+ P+++++++   
    KIAA1295    53 EGWAPATFIDKY    64   

PF07653.7.ls: domain 1 of 2, from 11 to 64: score 18.5, E = 0.004
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                       + +i ++   t +++      +s+++G +v+Vi    +k+  gww+
    KIAA1295    11    EYYTIAEFQT-TIPDG------ISFQAGLKVEVI----EKNLSGWWY 46   

                   geslggGrrrRGlvPssaveel<-*
                        + ++  G++P++++ ++   
    KIAA1295    47 IQI--EDKE--GWAPATFIDKY    64   

PF00018.18.ls: domain 2 of 2, from 492 to 549: score 27.3, E = 2.6e-05
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgG.
                        +vA  D+e+  +   sF++G v++v ek+ + gWW++++++  G 
    KIAA1295   492    SLYVAVADFEGDKDTS-SFQEGTVFEVREKNSS-GWWFCQVLS--Ga 534  

                   ..keGliPsNYVepv<-*
                   ++ eG+iPsNY++++   
    KIAA1295   535 psWEGWIPSNYLRKK    549  

PF07653.7.ls: domain 2 of 2, from 493 to 549: score 22.9, E = 0.001
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      +++a+ d+++  + +        s+++G v++V     +k++ gww+
    KIAA1295   493    LYVAVADFEG-DKDTS-------SFQEGTVFEVR----EKNSSGWWF 527  

                   geslgg..GrrrRGlvPssaveel<-*
                   + +l+g +  +  G++Ps+++++    
    KIAA1295   528 CQVLSGapSWE--GWIPSNYLRKK    549  

PF00018.18.fs: domain 2 of 2, from 508 to 549: score 28.5, E = 5.3e-07
                   *->sFkkGDvitvleksddpgWWkgrlkgtgG...keGliPsNYVepv<-
                      sF++G v++v ek+ + gWW++++++  G ++ eG+iPsNY++++  
    KIAA1295   508    SFQEGTVFEVREKNSS-GWWFCQVLS--GapsWEGWIPSNYLRKK   549  

                   *
                    
    KIAA1295     -   -    

//