# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg03576.fasta.huge -Q ../query/KIAA1296.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1296, 815 aa
 vs ./tmplib.24314 library

1986690 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.4486+/-0.00773; mu= 0.2009+/- 0.523
 mean_var=246.7783+/-60.077, 0's: 0 Z-trim: 10  B-trim: 153 in 1/39
 Lambda= 0.081643

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0777  ( 1171 res)   hk05279                    (1171)  976 128.6 3.8e-30
KIAA1494  ( 638 res)   fj08673                     ( 638)  253 43.2 0.00011


>>KIAA0777  ( 1171 res)   hk05279                         (1171 aa)
 initn: 1394 init1: 344 opt: 976  Z-score: 633.2  bits: 128.6 E(): 3.8e-30
Smith-Waterman score: 976;  59.004% identity (77.778% similar) in 261 aa overlap (561-813:917-1171)

              540       550       560       570           580      
KIAA12 EQEEADIAARRHTGVIPTHHQFITNERFGDLLNIDDTAKR-KSGS---EMRPARAKFDFK
                                     : ..  .: : . :.   :  ::.: .:::
KIAA07 DVDTANSSCHHQDRGGALQDRESPRSYSSTLTDMGRSAPRERRGTPEKEKLPAKAVYDFK
        890       900       910       920       930       940      

        590       600       610       620       630       640      
KIAA12 AQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKKLTP-V
       ::: ::: ..::: ::: ..:::::::::::::::::: .:.: : : ::::: .  : .
KIAA07 AQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPA
        950       960       970       980       990      1000      

         650       660       670       680       690       700     
KIAA12 QVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD
       :  : ::::::.:::.::.::.:.:::.:. ::..::.:::::.::::.::::::..::.
KIAA07 QPGEIGEAIAKYNFNADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVE
       1010      1020      1030      1040      1050      1060      

         710       720         730       740        750       760  
KIAA12 VIKRPLVKNPVDYMD--LPFSSSPSRSATASPQQPQAQQRRV-TPDRSQTSQDLFSYQAL
       :.:.  .:.  :: :  .: : : .:  . : ..:   :: : : .  : . . :  :::
KIAA07 VVKKN-TKGAEDYPDPPIPHSYSSDRIHSLSSNKP---QRPVFTHENIQGGGEPF--QAL
       1070       1080      1090      1100         1110        1120

            770       780       790       800       810     
KIAA12 YSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPLYL
       :.: :.:.::::::..:..::::::::::::::::::: :::::::::: :  
KIAA07 YNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL  
             1130      1140      1150      1160      1170   

>>KIAA1494  ( 638 res)   fj08673                          (638 aa)
 initn: 403 init1: 193 opt: 253  Z-score: 176.2  bits: 43.2 E(): 0.00011
Smith-Waterman score: 253;  38.462% identity (67.308% similar) in 104 aa overlap (710-813:153-254)

     680       690       700       710       720       730         
KIAA12 QVDENWYEGRIPGTSRQGIFPITYVDVIKRPLVKNPVDYMDLPFSSSPSRSATASPQQPQ
                                     ::.   :     : ... . .:  .:.   
KIAA14 PVTTGPSFTFPSDVPYQAALGTLNPPLPPPPLLAATVLASTPPGATAAAAAAGMGPRPMA
            130       140       150       160       170       180  

     740       750       760       770       780       790         
KIAA12 AQQRRVTPDRSQTSQDLFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRT
       ..  ...  : ::  ..  : :.: : :...:::::: :..  :.:.:.:::: ::: .:
KIAA14 GSTDQIAHLRPQTRPSV--YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHT
            190         200       210       220       230       240

     800       810                                                 
KIAA12 KQFGTFPGNYVKPLYL                                            
       ...:.:::::: :.                                              
KIAA14 SKIGVFPGNYVAPVTRAVTNASQAKVPMSTAGQTSRGVTMVSPSTAGGPAQKLQGNGVAG
              250       260       270       280       290       300




815 residues in 1 query   sequences
1986690 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:16:37 2008 done: Thu Dec 18 15:16:38 2008
 Total Scan time:  0.600 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]