hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22520897/chunk_1/iprscan-20080501-22520897.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1296 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00326 228.4 6e-64 3 SM00459 98.5 8e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00459 1/1 278 324 .. 1 55 [] 98.5 8e-25 SM00326 1/3 577 632 .. 1 58 [] 76.3 3.9e-18 SM00326 2/3 651 708 .. 1 58 [] 71.6 9.5e-17 SM00326 3/3 757 814 .. 1 58 [] 80.5 2e-19 Alignments of top-scoring domains: SM00459: domain 1 of 1, from 278 to 324: score 98.5, E = 8e-25 *->vrnvdypgivpvDEsGIPlasPrSsveRpkDmSQWYrtMFKQIHrkg v++ +++++v+ DE+GIPl+ ++eR+kD WY+tMFKQIH+++ KIAA1296 278 VKSTQDLSDVSMDEVGIPLR----NTERSKD---WYKTMFKQIHKLN 317 kpDddnDv<-* +Ddd+D KIAA1296 318 -RDDDSDL 324 SM00326: domain 1 of 3, from 577 to 632: score 76.3, E = 3.9e-18 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG + ++A++D++aq+ EL+++kGDi+++ +++d++W+eGe++ G++G KIAA1296 577 RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHH--GRVG 621 lfPsnYVeeie<-* +fP +Y+e+++ KIAA1296 622 IFPRTYIELLP 632 SM00326: domain 2 of 3, from 651 to 708: score 71.6, E = 9.5e-17 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG ++++A++++++++ E+sF+kG+ it+l+++d++W+eG++ +t ++G KIAA1296 651 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQG 697 lfPsnYVeeie<-* +fP +YV +i+ KIAA1296 698 IFPITYVDVIK 708 SM00326: domain 3 of 3, from 757 to 814: score 80.5, E = 2e-19 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG + ++AlY+y +qn+dEL ++ GDi+ v ek+ddgW+ G+ +rt + G KIAA1296 757 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFG 803 lfPsnYVeeie<-* fP+nYV+++ KIAA1296 804 TFPGNYVKPLY 814 //