hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23004825/chunk_1/iprscan-20080501-23004825.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1301 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00119 623.0 1e-182 1 SM00456 93.9 1.9e-23 2 SM00239 56.5 3.3e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/1 195 306 .. 1 92 [] 56.5 3.3e-12 SM00456 1/2 817 849 .. 1 34 [] 54.0 1.9e-11 SM00456 2/2 995 1027 .. 1 34 [] 39.9 3.4e-07 SM00119 1/1 1244 1581 .] 1 407 [] 623.0 1e-182 Alignments of top-scoring domains: SM00239: domain 1 of 1, from 195 to 306: score 56.5, E = 3.3e-12 *->tLtvkiisArnLp.......DPYVkvs...................k ++t+ ++A +L+++ ++DPY k+s +++++++ ++ ++++ ++ KIAA1301 195 SFTLSDLRAVGLKkgmffnpDPYLKMSiqpgkkssfptcahhgqerR 241 TkvvkktlsgfNPvWnEesetFeFevpp.s.LeieVyDk.........df + ++ +t NP+W+ e ++ F ++ Leie++Dk ++++ ++f KIAA1301 242 STIISNTT---NPIWHRE--KYSFFALLtDvLEIEIKDKfaksrpiikRF 286 iGrvtippnnahqhsadglihlsell.ggrh.kl<-* +G++tip +++ll+++ + KIAA1301 287 LGKLTIP--------------VQRLLeRQAIgDQ 306 SM00456: domain 1 of 2, from 817 to 849: score 54.0, E = 1.9e-11 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* lPp+We+r+d Gr++Y++h++++t+W++P+ KIAA1301 817 ALPPNWEARIDSH-GRIFYVDHVNRTTTWQRPTA 849 SM00456: domain 2 of 2, from 995 to 1027: score 39.9, E = 3.4e-07 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* lP gWe+ d + G+ ++++h++++t++ +Pr+ KIAA1301 995 ELPRGWEMKHDHQ-GKAFFVDHNSRTTTFIDPRL 1027 SM00119: domain 1 of 1, from 1244 to 1581: score 623.0, E = 1e-182 *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske +s +dL++++ L+++f vgEeglD++G++rEFffl+s+e KIAA1301 1244 GYSRKDLQRNK---LYVTF------VGEEGLDYSGPSREFFFLVSRE 1281 lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav lfnp +ygLF+ys+nd+ ++ ++sa++ n+ + KIAA1301 1282 LFNP-YYGLFEYSANDT------------YTVQISPMSAFVDNHHE---- 1314 yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP +Frf Gr+lG+Al++++llD++F+rpFyK LL+ ++l+Dle+lD KIAA1301 1315 WFRFSGRILGLALIHQYLLDAFFTRPFYKALLRIL----CDLSDLEYLDE 1360 elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles e+++sL+w+ ++ndi ++ ld LtF++++e KIAA1301 1361 EFHQSLQWM-------------------KDNDIHDI-LD--LTFTVNEEV 1388 dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG fg+ +++ELkpGG+nipVTe+NkkEY+++++ +r ++gv +q+e +++G KIAA1301 1389 -FGQITERELKPGGANIPVTEKNKKEYIERMVKWRIERGVVQQTESLVRG 1437 FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq F+eV++ +l + +Fd++ELeL i+G++ eid++d+++nTeyrggY++n++ KIAA1301 1438 FYEVVDARLVS-VFDARELELVIAGTA-EIDLSDWRNNTEYRGGYHDNHI 1485 tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq +i +wFW +ve+F+ne+r +LLqFVTG+s++P ++GFa+L++sNGp+ KIAA1301 1486 VI---RWFWAAVERFNNEQRLRLLQFVTGTSSIP--YEGFASLRGSNGPR 1530 kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg +F+++k+g + + LP+AhTCfNrL+LPpY S ++L+eKLL+A++e KIAA1301 1531 RFCVEKWG-----KITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAVEE- 1574 RiggeGFgls<-* + Fgl+ KIAA1301 1575 ---TSTFGLE 1581 //