hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23023636/chunk_1/iprscan-20080501-23023636.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1302 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05593.4.fs RHS Repeat 66.6 3.2e-18 8 PF05593.4.ls RHS Repeat 70.9 3.6e-18 7 PF01436.11.fs NHL repeat 58.9 4.3e-15 6 PF01436.11.ls NHL repeat 50.3 5.8e-12 5 PF00008.17.fs EGF-like domain 42.8 4.2e-11 2 PF00008.17.ls EGF-like domain 46.3 9.6e-11 2 PF07974.3.fs EGF-like domain 41.2 1.6e-10 2 PF07974.3.ls EGF-like domain 44.6 3.1e-10 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00008.17.ls 1/2 7 33 .. 1 38 [] 27.1 5.6e-05 PF07974.3.fs 1/2 7 33 .. 1 37 [] 28.6 5.3e-07 PF00008.17.fs 1/2 7 33 .. 1 38 [] 25.5 3.2e-06 PF07974.3.ls 1/2 7 33 .. 1 37 [] 30.3 6.4e-06 PF01436.11.fs 1/6 476 496 .. 1 22 [. 7.0 0.82 PF01436.11.ls 1/5 476 502 .. 1 29 [] 1.8 8.1 PF01436.11.ls 2/5 594 619 .. 1 29 [] 1.7 8.4 PF01436.11.ls 3/5 653 688 .. 1 29 [] 17.8 0.037 PF01436.11.fs 4/6 653 688 .. 1 29 [] 15.8 0.0031 PF01436.11.ls 4/5 714 741 .. 1 29 [] 6.3 2.2 PF01436.11.fs 6/6 783 808 .. 1 27 [. 20.8 0.00013 PF01436.11.ls 5/5 783 810 .. 1 29 [] 22.7 0.0013 PF05593.4.ls 1/7 859 896 .. 1 44 [] 12.6 1 PF05593.4.ls 2/7 922 960 .. 1 44 [] 15.5 0.17 PF05593.4.ls 6/7 1464 1498 .. 1 44 [] 12.2 1.1 PF05593.4.fs 8/8 1518 1571 .. 1 44 [] 19.2 0.0001 PF05593.4.ls 7/7 1518 1571 .. 1 44 [] 21.1 0.0038 Alignments of top-scoring domains: PF00008.17.ls: domain 1 of 2, from 7 to 33: score 27.1, E = 5.6e-05 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+p C +GtC+d+ +CeC pG ++G++C KIAA1302 7 CHP---RCAEHGTCRDG----KCECSPG----WNGEHC 33 PF07974.3.fs: domain 1 of 2, from 7 to 33: score 28.6, E = 5.3e-07 *->C...CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+++C + hGtC+ gkC+C++g + G +C KIAA1302 7 ChprCAE-HGTCR--------DGKCECSPG----WNGEHC 33 PF00008.17.fs: domain 1 of 2, from 7 to 33: score 25.5, E = 3.2e-06 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+p C +GtC+d+ +CeC pG ++G++C KIAA1302 7 CHP---RCAEHGTCRDG----KCECSPG----WNGEHC 33 PF07974.3.ls: domain 1 of 2, from 7 to 33: score 30.3, E = 6.4e-06 *->C...CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+++C + hGtC+ gkC+C++g + G +C KIAA1302 7 ChprCAE-HGTCR--------DGKCECSPG----WNGEHC 33 PF01436.11.fs: domain 1 of 6, from 476 to 496: score 7.0, E = 0.82 *->lnrPhGvavdpsdGrvyVaDse<-* l P ++ + sdG +yV D++ KIAA1302 476 LLAPVALTCG-SDGSLYVGDFN 496 PF01436.11.ls: domain 1 of 5, from 476 to 502: score 1.8, E = 8.1 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l P ++ + sdG +yV D++ r ++f KIAA1302 476 LLAPVALTCG-SDGSLYVGDFNYIR-RIF 502 PF01436.11.ls: domain 2 of 5, from 594 to 619: score 1.7, E = 8.4 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l +P+G++vd + G +y +D ++ + KIAA1302 594 LTNPRGITVD-KFGLIYFVD--GTMIRRI 619 PF01436.11.ls: domain 3 of 5, from 653 to 688: score 17.8, E = 0.037 *->lnrPhGvavdpsdGrvyVaD.......senhrvqvf<-* l P+++a++p d+ +yV D++ + senh+v++ KIAA1302 653 LEWPTDLAINPMDNSLYVLDnnvvlqiSENHQVRIV 688 PF01436.11.fs: domain 4 of 6, from 653 to 688: score 15.8, E = 0.0031 *->lnrPhGvavdpsdGrvyVaD.......senhrvqvf<-* l P+++a++p d+ +yV D++ + senh+v++ KIAA1302 653 LEWPTDLAINPMDNSLYVLDnnvvlqiSENHQVRIV 688 PF01436.11.ls: domain 4 of 5, from 714 to 741: score 6.3, E = 2.2 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l + + +av+ +G +y+a+++ ++ + KIAA1302 714 LESATALAVS-HNGVLYIAETDEKKINRI 741 PF01436.11.fs: domain 6 of 6, from 783 to 808: score 20.8, E = 0.00013 *->lnrPhGvavdpsdGrvyVaDsenhrvq<-* ln P+++av dG++yVaD +n r++ KIAA1302 783 LNTPSSLAVC-ADGELYVADLGNIRIR 808 PF01436.11.ls: domain 5 of 5, from 783 to 810: score 22.7, E = 0.0013 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* ln P+++av dG++yVaD +n r++ + KIAA1302 783 LNTPSSLAVC-ADGELYVADLGNIRIRFI 810 PF05593.4.ls: domain 1 of 7, from 859 to 896: score 12.6, E = 1 *->YDadGrLtavtdpsggvgttyrYDaaGrltaltlttstdagGrt<-* Y dG++t +td++g+ + r D+ G++ l ++G++ KIAA1302 859 YTGDGDITLITDNNGNMV-NVRRDSTGMPLWL-----VVPDGQV 896 PF05593.4.ls: domain 2 of 7, from 922 to 960: score 15.5, E = 0.17 *->YDadGrLtavtdpsggvgtt.yrYDaaGrltaltlttstdagGrt<- Y + L+a+ + +g + t y+YD++Grlt + t + G++ KIAA1302 922 YHGNSGLLATKSNENGWT-TfYEYDSFGRLTNV-----TFPTGQV 960 * KIAA1302 - - PF05593.4.ls: domain 6 of 7, from 1464 to 1498: score 12.2, E = 1.1 *->YDadGrLtavtdpsggvgtt.yrYDaaGrltaltlttstdagGrt<- YD +G+L ++ + +++ t++rYD ++r+t+l G + KIAA1302 1464 YDLNGNLHLLSPGNSARL-TpLRYDIRDRITRL---------GDV 1498 * KIAA1302 - - PF05593.4.fs: domain 8 of 8, from 1518 to 1571: score 19.2, E = 0.0001 *->YDadGrLtavtdpsggvgt.tyrYDaaGrlt...............a Y+++G L++ + ++ g++ +yrYD++Gr+++++++++++ + + KIAA1302 1518 YNSAGLLIKAY-NRAGSWSvRYRYDGLGRRVssksshshhlqffyaD 1563 ltlttstdagGrt<-* l t++ ++t KIAA1302 1564 L-----TNPTKVT 1571 PF05593.4.ls: domain 7 of 7, from 1518 to 1571: score 21.1, E = 0.0038 *->YDadGrLtavtdpsggvgt.tyrYDaaGrlt...............a Y+++G L++ + ++ g++ +yrYD++Gr+++++++++++ + + KIAA1302 1518 YNSAGLLIKAY-NRAGSWSvRYRYDGLGRRVssksshshhlqffyaD 1563 ltlttstdagGrt<-* l t++ ++t KIAA1302 1564 L-----TNPTKVT 1571 //