hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23111343/chunk_1/iprscan-20080501-23111343.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1307
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02207.10.ls Putative zinc finger in N-recognin (UBR box)    98.9    1.4e-26   1
PF02207.10.fs Putative zinc finger in N-recognin (UBR box)    97.1    4.9e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02207.10.fs   1/1     882   950 ..     1    83 []    97.1  4.9e-26
PF02207.10.ls   1/1     882   950 ..     1    83 []    98.9  1.4e-26

Alignments of top-scoring domains:
PF02207.10.fs: domain 1 of 1, from 882 to 950: score 97.1, E = 4.9e-26
                   *->klCghvEGfkpgEtiNQnlYrCkTCsldpGstcvlCyeCFrascHkg
                      klC+++   +++E++NQ++Y+C+TC + +   +++C++C+  +cHk+
    KIAA1307   882    KLCTFT--ITQKEFMNQHWYHCHTCKMVD--GVGVCTVCAK-VCHKD 923  

                   HdvlvslktsagsEGgiCDCGdkeAwnedlkCkahe<-*
                   H+   s++++++   ++CDCG+k    ed++C a+    
    KIAA1307   924 HE--ISYAKYGS---FFCDCGAK----EDGSCLALV    950  

PF02207.10.ls: domain 1 of 1, from 882 to 950: score 98.9, E = 1.4e-26
                   *->klCghvEGfkpgEtiNQnlYrCkTCsldpGstcvlCyeCFrascHkg
                      klC+++   +++E++NQ++Y+C+TC + +   +++C++C+  +cHk+
    KIAA1307   882    KLCTFT--ITQKEFMNQHWYHCHTCKMVD--GVGVCTVCAK-VCHKD 923  

                   HdvlvslktsagsEGgiCDCGdkeAwnedlkCkahe<-*
                   H+   s++++++   ++CDCG+k    ed++C a+    
    KIAA1307   924 HE--ISYAKYGS---FFCDCGAK----EDGSCLALV    950  

//