hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23143370/chunk_1/iprscan-20080501-23143370.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1309 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00612 202.8 3.2e-56 6 SM00225 81.6 9.5e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00225 1/1 76 175 .. 1 114 [] 81.6 9.5e-20 SM00612 1/6 325 373 .. 1 55 [] 23.7 0.026 SM00612 2/6 374 425 .. 1 55 [] 34.2 1.7e-05 SM00612 3/6 426 472 .. 1 55 [] 53.4 2.9e-11 SM00612 4/6 473 519 .. 1 55 [] 37.4 2e-06 SM00612 5/6 520 571 .. 1 55 [] 35.5 7e-06 SM00612 6/6 572 620 .. 1 55 [] 18.6 0.16 Alignments of top-scoring domains: SM00225: domain 1 of 1, from 76 to 175: score 81.6, E = 9.5e-20 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. cDvtl+ g+ +d f++ H++ a+ S+yFka+f+++ KIAA1309 76 CDVTLMPGD---TD----DAFPV--HRVMMASA---SDYFKAMFTGg 110 ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel ++++ i l + vs +r +++f+Yt kl+l+++ n+++ KIAA1309 111 mkeqdlmcIKLHG------VSKVGLRKIIDFIYTaKLSLNMD---NLQDT 151 LelAdfldSYGqip.lvelCeefllknl<-* Le+A+fl qi ++ + C+ fl++ KIAA1309 152 LEAASFL----QILpVLDFCKVFLISGV 175 SM00612: domain 1 of 6, from 325 to 373: score 23.7, E = 0.026 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg ++ GG + ++ +++k +YD + +W+++++M pR+ KIAA1309 325 HLVTLGGVLR------QQLVVSKELRMYDEKAHEWKSLAPMDAPRYQ 365 agvaving<-* +g+avi++ KIAA1309 366 HGIAVIGN 373 SM00612: domain 2 of 6, from 374 to 425: score 34.2, E = 1.7e-05 *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs +YvvGG+++ + +++++++v+++Dp+ nkW +v+s++ +R+ KIAA1309 374 FLYVVGGQSN----YDtKGKTAVDTVFRFDPRYNKWMQVASLNEKRT 416 gagvaving<-* + + +++g KIAA1309 417 FFHLSALKG 425 SM00612: domain 3 of 6, from 426 to 472: score 53.4, E = 2.9e-11 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg +Y+vGG++ + l +vE+Y+p+tn+W+ v++M+ p++g KIAA1309 426 YLYAVGGRNA--------AGELPTVECYNPRTNEWTYVAKMSEPHYG 464 agvaving<-* ++ +v +g KIAA1309 465 HAGTVYGG 472 SM00612: domain 4 of 6, from 473 to 519: score 37.4, E = 2e-06 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg + Y+ GG + ++ k ++Dp+t+kW + ++M+t R KIAA1309 473 VMYISGGITH--------DTFQKELMCFDPDTDKWIQKAPMTTVRGL 511 agvaving<-* ++++++++ KIAA1309 512 HCMCTVGE 519 SM00612: domain 5 of 6, from 520 to 571: score 35.5, E = 7e-06 *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs ++Yv+GG ++ + +++ + + s E+Y+p ++W+p++ M ++ s KIAA1309 520 RLYVIGGNHF----RGtSDYDDVLSCEYYSPILDQWTPIAAMLRGQS 562 gagvaving<-* +gvav+++ KIAA1309 563 DVGVAVFEN 571 SM00612: domain 6 of 6, from 572 to 620: score 18.6, E = 0.16 *->kiYvvGGfdgttrclpgegqrlksvEv...YDpetnkWrpvpsMptp kiYvvGG++ ++ +vE+ ++YDp+ ++W+ v ++p KIAA1309 572 KIYVVGGYS---------WNNRCMVEIvqkYDPDKDEWHKVFDLPES 609 Rsgagvaving<-* g ++++ KIAA1309 610 LGGIRACTLTV 620 //