hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23175918/chunk_1/iprscan-20080501-23175918.nocrc
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Query sequence: KIAA1311
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00642.15.fs Zinc finger C-x8-C-x5-C-x3-H type (and simil    25.0    1.6e-07   1
PF00642.15.ls Zinc finger C-x8-C-x5-C-x3-H type (and simil    27.0    6.2e-05   1
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     18.5     0.0002   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00642.15.fs   1/1     103   129 ..     1    27 []    25.0  1.6e-07
PF00642.15.ls   1/1     103   129 ..     1    27 []    27.0  6.2e-05
PF00076.12.fs   1/1     445   498 ..    14    74 .]    18.5   0.0002

Alignments of top-scoring domains:
PF00642.15.fs: domain 1 of 1, from 103 to 129: score 25.0, E = 1.6e-07
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      + +++Cr++ + G+C  Gd C+F Hg    
    KIAA1311   103    PPKRRCRDYDERGFCVLGDLCQFDHGN    129  

PF00642.15.ls: domain 1 of 1, from 103 to 129: score 27.0, E = 6.2e-05
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      + +++Cr++ + G+C  Gd C+F Hg    
    KIAA1311   103    PPKRRCRDYDERGFCVLGDLCQFDHGN    129  

PF00076.12.fs: domain 1 of 1, from 445 to 498: score 18.5, E = 0.0002
                   *->dLkdlFskfGpiesikivrDttretgrskGfaFVeFedeedAekAld
                      +L ++FskfG i++i++  +           a +++ + e+A+kA++
    KIAA1311   445    KLNEHFSKFGTIVNIQVAFK------GDPEAALIQYLTNEEARKAIS 485  

                   alnGkelggrelrv<-*
                      +  l++r +rv   
    KIAA1311   486 -STEAVLNNRFIRV    498  

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