# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh12764s1.fasta.huge -Q ../query/KIAA1315.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1315, 1981 aa
 vs ./tmplib.24314 library

1985524 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.5618+/-0.00706; mu= 0.3344+/- 0.477
 mean_var=221.0074+/-52.792, 0's: 0 Z-trim: 7  B-trim: 11 in 1/39
 Lambda= 0.086272

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 42, opt: 30, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1606  ( 1095 res)   fj10873                    (1095)  229 42.9 0.00054


>>KIAA1606  ( 1095 res)   fj10873                         (1095 aa)
 initn: 247 init1: 115 opt: 229  Z-score: 163.5  bits: 42.9 E(): 0.00054
Smith-Waterman score: 229;  29.379% identity (60.452% similar) in 177 aa overlap (1810-1980:891-1062)

    1780      1790      1800      1810      1820        1830       
KIAA13 VANRPLKCIVEETYIDLTTESPSSCEVKKDELKSEPGSNCDNSEL--PGTLHNSHKKRRN
                                     : .. ::.    . .  : . ..    ::.
KIAA16 PKASPRLQKEREGQKAVSESEALMLVWDASETEKLPGTVEPPASFLSPVSSKTRDAGRRH
              870       880       890       900       910       920

      1840      1850      1860      1870      1880        1890     
KIAA13 ISDLNHPHKKQRKETDLTNKEKTKKPTQDSCENTEAHQKKASKKKAP--PVTKDPSSLKA
       .:  ..:  ..:   .   . ::.  :    :.  . . . .. :::   ..:: ..   
KIAA16 VS--GKPDTQERWLPSSRARVKTRDRTCPVHESPSGIDTSETSPKAPRGGLAKDSGTQAK
                930       940       950       960       970        

         1900      1910      1920      1930      1940      1950    
KIAA13 TP-GIKDSSAALATSTSLSAKNVIKKKGEIIILWTRNDDREILLECQKRGPSFKTFAYLA
        : : .. .:: ::  . ..:  ... :: ..::::. :: ::  ::..: . .::  ..
KIAA16 GPEGEQQPKAAEATVCANNSK--VSSTGEKVVLWTREADRVILTMCQEQGAQPQTFNIIS
      980       990        1000      1010      1020      1030      

          1960      1970      1980                                 
KIAA13 AKL-DKNPNQVSERFQQLMKLFEKSKCR                                
        .: .:.: .::.::..::.::. . :                                 
KIAA16 QQLGNKTPAEVSHRFRELMQLFH-TACEASSEDEDDATSTSNADQLSDHGDLLSEEELDE
       1040      1050       1060      1070      1080      1090     




1981 residues in 1 query   sequences
1985524 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:17:26 2008 done: Thu Dec 18 15:17:28 2008
 Total Scan time:  1.000 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]