hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23282053/chunk_1/iprscan-20080501-23282053.nocrc
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Query sequence: KIAA1317
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02214.13.fs K+ channel tetramerisation domain               71.1    6.5e-21   1
PF02214.13.ls K+ channel tetramerisation domain               73.0    8.8e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02214.13.fs   1/1      34   129 ..     1   102 []    71.1  6.5e-21
PF02214.13.ls   1/1      34   129 ..     1   102 []    73.0  8.8e-19

Alignments of top-scoring domains:
PF02214.13.fs: domain 1 of 1, from 34 to 129: score 71.1, E = 6.5e-21
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      v LNVGG ++ T+ sTL  + P++lL ++++    + +++ +d  +d
    KIAA1317    34    VELNVGGQVYFTRHSTLISI-PHSLLWKMFS----PKRDTANDLAKD 75   

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrpevcld.sfleEleFyglde
                   +++ +F+DR+  +F++IL+++R+ +++L++ + ++++ +++E+e+++l++
    KIAA1317    76 SKGRFFIDRDGFLFRYILDYLRDRQVVLPD-HFPEKgRLKREAEYFQLPD 124  

                   laielC<-*
                   l + l    
    KIAA1317   125 L-VKLL    129  

PF02214.13.ls: domain 1 of 1, from 34 to 129: score 73.0, E = 8.8e-19
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      v LNVGG ++ T+ sTL  + P++lL ++++    + +++ +d  +d
    KIAA1317    34    VELNVGGQVYFTRHSTLISI-PHSLLWKMFS----PKRDTANDLAKD 75   

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrpevcld.sfleEleFyglde
                   +++ +F+DR+  +F++IL+++R+ +++L++ + ++++ +++E+e+++l++
    KIAA1317    76 SKGRFFIDRDGFLFRYILDYLRDRQVVLPD-HFPEKgRLKREAEYFQLPD 124  

                   laielC<-*
                   l + l    
    KIAA1317   125 L-VKLL    129  

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