hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23332642/chunk_1/iprscan-20080501-23332642.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1320 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 571.8 6.2e-169 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 569.9 2.4e-168 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00632.15.fs 1/1 260 567 .] 1 351 [] 569.9 2.4e-168 PF00632.15.ls 1/1 260 567 .] 1 351 [] 571.8 6.2e-169 Alignments of top-scoring domains: PF00632.15.fs: domain 1 of 1, from 260 to 567: score 569.9, E = 2.4e-168 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +ls e+ nPdy+LF++ + d +t+q+n +s++ np+ KIAA1320 260 DILSNEIVNPDYALFTQ-----------SADGTTFQPNSNSYV-NPD 294 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl+yF+F+G+ilGlAl +++l++++F+r+FYK++L g pv ++D +s+D KIAA1320 295 HLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHIL--GIPVNYQDVASID 342 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas Pe++++L+w+l+nd++ +++ LeLtFsve+++ f KIAA1320 343 PEYAKNLQWILDNDIS----------DLG-LELTFSVETDV---F----- 373 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G +++v+ LkP+G +I VT+ Nk eYV+L++e r+++ i++Q++AF+ KIAA1320 374 --GAMEEVP-LKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQ 420 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF++ ip++l++lFd+ ELelL++G+pe iDv+d+++nTeY +gY +++p KIAA1320 421 GFHMFIPPSLIQLFDEYELELLLSGMPE-IDVSDWIKNTEYTSGYEREDP 469 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +IqwFWevve tqeer++LLqFvTGssRvP+gGF++++ G +G++ KIAA1320 470 --VIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIM--GGSGLQN 515 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG FtI+ v + +++ LPt++TC+N+L+LP+Y+SkEiL+ +Ll+A + +++G KIAA1320 516 FTIAAV--PYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYG 563 Fgle<-* + ++ KIAA1320 564 YTMA 567 PF00632.15.ls: domain 1 of 1, from 260 to 567: score 571.8, E = 6.2e-169 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +ls e+ nPdy+LF++ + d +t+q+n +s++ np+ KIAA1320 260 DILSNEIVNPDYALFTQ-----------SADGTTFQPNSNSYV-NPD 294 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl+yF+F+G+ilGlAl +++l++++F+r+FYK++L g pv ++D +s+D KIAA1320 295 HLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHIL--GIPVNYQDVASID 342 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas Pe++++L+w+l+nd++ +++ LeLtFsve+++ f KIAA1320 343 PEYAKNLQWILDNDIS----------DLG-LELTFSVETDV---F----- 373 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G +++v+ LkP+G +I VT+ Nk eYV+L++e r+++ i++Q++AF+ KIAA1320 374 --GAMEEVP-LKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQ 420 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF++ ip++l++lFd+ ELelL++G+pe iDv+d+++nTeY +gY +++p KIAA1320 421 GFHMFIPPSLIQLFDEYELELLLSGMPE-IDVSDWIKNTEYTSGYEREDP 469 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +IqwFWevve tqeer++LLqFvTGssRvP+gGF++++ G +G++ KIAA1320 470 --VIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIM--GGSGLQN 515 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG FtI+ v + +++ LPt++TC+N+L+LP+Y+SkEiL+ +Ll+A + +++G KIAA1320 516 FTIAAV--PYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYG 563 Fgle<-* + ++ KIAA1320 564 YTMA 567 //