hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23381703/chunk_1/iprscan-20080501-23381703.nocrc
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Query sequence: KIAA1323
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00023.20.ls Ankyrin repeat                                 106.5    7.4e-29   3
PF00023.20.fs Ankyrin repeat                                 100.5    4.7e-27   3
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           16.1    2.5e-05   2
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           16.1     0.0032   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.fs   1/3      21    54 ..     1    33 []    39.0  6.7e-10
PF00023.20.ls   1/3      21    54 ..     1    33 []    41.0  3.7e-09
PF00023.20.ls   2/3      55    87 ..     1    33 []    43.3  7.5e-10
PF00023.20.fs   2/3      55    87 ..     1    33 []    41.3  1.5e-10
PF00023.20.fs   3/3      88   161 ..     1    33 []    20.1  0.00013
PF00023.20.ls   3/3      88   161 ..     1    33 []    22.1   0.0018
PF00097.15.ls   1/1     353   385 ..     1    50 []    16.1   0.0032
PF00097.15.fs   2/2     353   385 ..     1    50 []    14.4    9e-05

Alignments of top-scoring domains:
PF00023.20.fs: domain 1 of 3, from 21 to 54: score 39.0, E = 6.7e-10
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      dG+T+LHlAal++++ev++lL+ +  A+l++q+    
    KIAA1323    21    DGYTALHLAALNNHVEVAELLVHqGNANLDIQNV    54   

PF00023.20.ls: domain 1 of 3, from 21 to 54: score 41.0, E = 3.7e-09
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      dG+T+LHlAal++++ev++lL+ +  A+l++q+    
    KIAA1323    21    DGYTALHLAALNNHVEVAELLVHqGNANLDIQNV    54   

PF00023.20.ls: domain 2 of 3, from 55 to 87: score 43.3, E = 7.5e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      + +T+LHlA++r ++++v+lL+ +GA l++qd+   
    KIAA1323    55    NQQTALHLAVERQHTQIVRLLVRAGAKLDIQDK    87   

PF00023.20.fs: domain 2 of 3, from 55 to 87: score 41.3, E = 1.5e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      + +T+LHlA++r ++++v+lL+ +GA l++qd+   
    KIAA1323    55    NQQTALHLAVERQHTQIVRLLVRAGAKLDIQDK    87   

PF00023.20.fs: domain 3 of 3, from 88 to 161: score 20.1, E = 0.00013
                   *->dGfTPLHlAalrg..................................
                      dG+TPLH A ++   +      +  + ++ +   +++++    + + 
    KIAA1323    88    DGDTPLHEALRHHtlsqlrqlqdmqdvgkvdaawepskntlimglgt 134  

                   .......nlevvklLlsqGAdlnaqdd<-*
                    + ++++ ++++ +L  +GAdl ++++   
    KIAA1323   135 qgaekksAASIACFLAANGADLSIRNK    161  

PF00023.20.ls: domain 3 of 3, from 88 to 161: score 22.1, E = 0.0018
                   *->dGfTPLHlAalrg..................................
                      dG+TPLH A ++   +      +  + ++ +   +++++    + + 
    KIAA1323    88    DGDTPLHEALRHHtlsqlrqlqdmqdvgkvdaawepskntlimglgt 134  

                   .......nlevvklLlsqGAdlnaqdd<-*
                    + ++++ ++++ +L  +GAdl ++++   
    KIAA1323   135 qgaekksAASIACFLAANGADLSIRNK    161  

PF00097.15.ls: domain 1 of 1, from 353 to 385: score 16.1, E = 0.0032
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++Cl+ lk+      +i  CgH       C+ C  r+ +      C
    KIAA1323   353    CPVCLDRLKN------MIFLCGHG-----TCQLCGDRMSE------C 382  

                   plC<-*
                   p+C   
    KIAA1323   383 PIC    385  

PF00097.15.fs: domain 2 of 2, from 353 to 385: score 14.4, E = 9e-05
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++Cl+ lk+      +i  CgH       C+ C  r+ +      C
    KIAA1323   353    CPVCLDRLKN------MIFLCGHG-----TCQLCGDRMSE------C 382  

                   plC<-*
                   p+C   
    KIAA1323   383 PIC    385  

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