hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23430686/chunk_1/iprscan-20080501-23430686.nocrc
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Query sequence: KIAA1326
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF08374.2.fs  Protocadherin                             201.8    1.3e-57   1
PF08374.2.ls  Protocadherin                               7.3    9.6e-11   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF08374.2.fs    1/1       1    78 [.   153   232 .]   201.8  1.3e-57
PF08374.2.ls    1/1       1    78 [.     1   232 []     7.3  9.6e-11

Alignments of top-scoring domains:
PF08374.2.fs: domain 1 of 1, from 1 to 78: score 201.8, E = 1.3e-57
                   *->lPtnfkPgSPDLARHYKSaSPlPafQLqPqsPvasKKHqvvQdLPla
                      +Pt+fkP+SPDLARHYKSaSP+PafQ+qP++P++s KH+++Q+LPl+
    KIAA1326     1    TPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNS-KHHIIQELPLD 46   

                   NTFVGagDtiSKrSStgSDhySeysCrtnvnky<-*
                   NTFV a+D+iSK+SS++SD+yS+++C+++v+++   
    KIAA1326    47 NTFV-ACDSISKCSSSSSDPYSVSDCGYPVTTF    78   

PF08374.2.ls: domain 1 of 1, from 1 to 78: score 7.3, E = 9.6e-11
                   *->TvaNATlieeLirrSleTPLdrdIagdpeyerskdrlkIliavVAGv
                                                                     
    KIAA1326     -    ----------------------------------------------- -    

                   mtVilvIfvtVlVRYCRqaEsklkyaagkKqtedwftPnqenKqsikkkK
                                                                     
    KIAA1326     - -------------------------------------------------- -    

                   KKkKKkKSPKplllnfVTiEesKpdDededgvnktLsLpleldepsmGry
                                                                     
    KIAA1326     - -------------------------------------------------- -    

                   dWGvalPtnfkPgSPDLARHYKSaSPlPafQLqPqsPvasKKHqvvQdLP
                        +Pt+fkP+SPDLARHYKSaSP+PafQ+qP++P++s KH+++Q+LP
    KIAA1326     1 -----TPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNS-KHHIIQELP 44   

                   laNTFVGagDtiSKrSStgSDhySeysCrtnvnky<-*
                   l+NTFV a+D+iSK+SS++SD+yS+++C+++v+++   
    KIAA1326    45 LDNTFV-ACDSISKCSSSSSDPYSVSDCGYPVTTF    78   

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