HUGE

Gene/Protein Characteristic Table for KIAA1327

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04970
Accession No. :	AB037748
Description :	Protein FAM44A.
HUGO Gene Name :
Clone Name :	fh14466s1 [Vector Info]
Source :	Human fetal brain
Note :	We replaced fh14466, former representative clones for KIAA1327 with fh14466s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 6687 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1270 bp

Genome contig ID gi89161207r_13079464
PolyA signal sequence
(TATAAA,-15)
+----*----+----*----+----*----+----
CTGAGATTTTATATATAAATTATAAAATGTTTACC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAATTTGAGTGGTAAGAATTTTATTTGTGTGTTTTAAAATGTGTCTGCA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 r 13179464 13213882 17 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 1804 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q8NFC6	0	99.9	Protein FAM44A.	Homo sapiens
XP_001098928	0	94.8	similar to CG55...	Macaca mulatta
XP_001917633	0	76.5	similar to Prot...	Equus caballus
XP_585315	0	63.0	hypothetical LO...	Bos taurus
BAG60410	6.6e-197	99.2	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000637 1625 1637 PF02178 HMG-I and HMG-Y

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000637	1625	1637	PF02178	HMG-I and HMG-Y

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TACTTGCATCTGTGACTTTAC

Primer_r
: GGAAAGAGTATTGGTAGAAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 4

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1270 bp
Genome contig ID	gi89161207r_13079464
PolyA signal sequence (TATAAA,-15)	+--------+--------+----*----+---- CTGAGATTTTATATATAAATTATAAAATGTTTACC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAATTTGAGTGGTAAGAATTTTATTTGTGTGTTTTAAAATGTGTCTGCA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	r	13179464	13213882	17	99.2	Perfect prediction

Primer_f	: TACTTGCATCTGTGACTTTAC
Primer_r	: GGAAAGAGTATTGGTAGAAGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1327

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information