hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23530144/chunk_1/iprscan-20080501-23530144.nocrc
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Query sequence: KIAA1332
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07646.5.ls Kelch motif                                     72.8    9.8e-19   5
PF07646.5.fs Kelch motif                                     66.5    3.1e-17   4
PF01344.15.fs Kelch motif                                     60.2    2.9e-16   3
PF01344.15.ls Kelch motif                                     58.4    2.2e-14   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01344.15.fs   1/3      52    97 ..     1    40 [.    15.1   0.0018
PF01344.15.ls   1/3      52   103 ..     1    45 []    11.7     0.17
PF07646.5.fs   1/4      52   102 ..     1    54 []    21.9  4.4e-05
PF07646.5.ls   1/5      52   102 ..     1    54 []    23.8  0.00058
PF01344.15.ls   2/3     107   161 ..     1    45 []    13.6      0.1
PF07646.5.ls   3/5     165   211 ..     1    54 []    41.9  2.1e-09
PF01344.15.ls   3/3     165   211 ..     1    45 []    33.0  9.4e-07
PF01344.15.fs   3/3     165   206 ..     1    40 [.    33.4  1.2e-08
PF07646.5.fs   3/4     165   211 ..     1    54 []    40.0  5.1e-10

Alignments of top-scoring domains:
PF01344.15.fs: domain 1 of 3, from 52 to 97: score 15.1, E = 0.0018
                   *->pRsgagvvvld..gkiYviGGydg....qslnsvevYDpetntWtk<
                       R +++++++d +  +Yv+GG++ ++ + ++n+ +++D+ +++W + 
    KIAA1332    52    QRFSHSACYYDanQSMYVFGGCTQsscnAAFNDLWRLDLNSKEWIR  97   

                   -*
                     
    KIAA1332     -    -    

PF01344.15.ls: domain 1 of 3, from 52 to 103: score 11.7, E = 0.17
                   *->pRsgagvvvld..gkiYviGGydg....qslnsvevYDpetntW.tk
                       R +++++++d +  +Yv+GG++ ++ + ++n+ +++D+ +++W ++
    KIAA1332    52    QRFSHSACYYDanQSMYVFGGCTQsscnAAFNDLWRLDLNSKEWiRP 98   

                   lpsmp<-*
                   l+s +   
    KIAA1332    99 LASGS    103  

PF07646.5.fs: domain 1 of 4, from 52 to 102: score 21.9, E = 4.4e-05
                   *->pryphasvvp..ggklyvvGGsfkgnrgtgngdesssdllvldpetn
                      +r +h+++ ++ ++ +yv+GG+         ++ +++dl++ld++++
    KIAA1332    52    QRFSHSACYYdaNQSMYVFGGC-----TQSSCNAAFNDLWRLDLNSK 93   

                   vWeklpalp<-*
                   +W +  a +   
    KIAA1332    94 EWIRPLASG    102  

PF07646.5.ls: domain 1 of 5, from 52 to 102: score 23.8, E = 0.00058
                   *->pryphasvvp..ggklyvvGGsfkgnrgtgngdesssdllvldpetn
                      +r +h+++ ++ ++ +yv+GG+         ++ +++dl++ld++++
    KIAA1332    52    QRFSHSACYYdaNQSMYVFGGC-----TQSSCNAAFNDLWRLDLNSK 93   

                   vWeklpalp<-*
                   +W +  a +   
    KIAA1332    94 EWIRPLASG    102  

PF01344.15.ls: domain 2 of 3, from 107 to 161: score 13.6, E = 0.1
                   *->pRsgagvvvldgkiYviGGydg..........qslnsvevYDpetnt
                      p +ga+ vv+++++  +GG++ +++ + ++++++++ +  Y+p++n 
    KIAA1332   107    PKAGATLVVYKDLLVLFGGWTRpspyplhqpeRFFDEIHTYSPSKNW 153  

                   Wtklpsmp<-*
                   W  + +     
    KIAA1332   154 WNCIVTTH    161  

PF07646.5.ls: domain 3 of 5, from 165 to 211: score 41.9, E = 2.1e-09
                   *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW
                      p+++h+s+v+++k++v+GGs       ++    s+d++vld+e ++W
    KIAA1332   165    PMAGHSSCVIDDKMIVFGGS-------LGSRQMSNDVWVLDLEQWAW 204  

                   eklpalp<-*
                   +k +  +   
    KIAA1332   205 SKPNISG    211  

PF01344.15.ls: domain 3 of 3, from 165 to 211: score 33.0, E = 9.4e-07
                   *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp
                      p +g++++v+d+k+ v+GG+ g++q +n+v+v+D+e   W+k    +
    KIAA1332   165    PMAGHSSCVIDDKMIVFGGSLGsrQMSNDVWVLDLEQWAWSKPNISG 211  

                   <-*
                      
    KIAA1332     -     -    

PF01344.15.fs: domain 3 of 3, from 165 to 206: score 33.4, E = 1.2e-08
                   *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtk<-*
                      p +g++++v+d+k+ v+GG+ g++q +n+v+v+D+e   W+k   
    KIAA1332   165    PMAGHSSCVIDDKMIVFGGSLGsrQMSNDVWVLDLEQWAWSK    206  

PF07646.5.fs: domain 3 of 4, from 165 to 211: score 40.0, E = 5.1e-10
                   *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW
                      p+++h+s+v+++k++v+GGs       ++    s+d++vld+e ++W
    KIAA1332   165    PMAGHSSCVIDDKMIVFGGS-------LGSRQMSNDVWVLDLEQWAW 204  

                   eklpalp<-*
                   +k +  +   
    KIAA1332   205 SKPNISG    211  

//