hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23544355/chunk_1/iprscan-20080501-23544355.nocrc
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Query sequence: KIAA1333
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00632.15.ls HECT-domain (ubiquitin-transferase)            -80.9    1.1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00628.19.fs   1/3     115   141 ..     1    30 [.    10.5   0.0058
PF00632.15.ls   1/1     449   729 ..     1   351 []   -80.9  1.1e-05

Alignments of top-scoring domains:
PF00628.19.fs: domain 1 of 3, from 115 to 141: score 10.5, E = 0.0058
                   *->yCsvCgkeysdaggdllqCD..gCdrwfHlaC<-*
                       C+vC+k      g  ++C  + C+r++H  C   
    KIAA1333   115    KCCVCKK-----NGASIGCVapRCKRSYHFPC    141  

PF00632.15.ls: domain 1 of 1, from 449 to 729: score -80.9, E = 1.1e-05
                   *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe
                      +Ll++ l   +  LFe               s+ l  n    +    
    KIAA1333   449    SLLMQHLE--NSSLFE------------GSLSKNLSLNSQALK---- 477  

                   hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLm.k.gkpvtleDles
                    +++++ +G++l++ l +g   + +F+  ++  L+ + ++  + l+D ++
    KIAA1333   478 -ENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYgPeNTQPILDDVSD 526  

                   vDPelynSLkwllendgdrhILLgsledveedLe..LtFsveeessagfd
                   +D  +++ ++ +  n  +          +++dL + ++ + ++ +     
    KIAA1333   527 FD--VAQIIIRI--NTAT----------TVADLKsiINECYNYLE----- 557  

                   pdasdfGetktveELkPnGrnIpV.TneNkkeYVeLyveyrLnkgiekQf
                                 L+  G     +T + k   V+ +  y ++ ++  +f
    KIAA1333   558 --------------LI--GCLRLItTLSDKYMLVKDILGYHVIQRVHTPF 591  

                   eAFrkGFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYk...
                   e F+ G+ ++  ++ ++  +pe ++ ++c  pe+++ + L +  + ++ +
    KIAA1333   592 ESFKQGLKTLGVLEKIQA-YPEAFCSILCHKPESLSAKILSELFTVHtlp 640  

                   ....ggYtedsplktIqwFWevvee.ftqeerkkLLqFvTGssRvPlgGF
                   + +  g++++          ++ve + +   + + L F TG+s++P+ GF
    KIAA1333   641 dvkaLGFWNSYL--------QAVEDgKSTTTMEDILIFATGCSSIPPAGF 682  

                   kaLqgpGsnGppkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLr
                   k  +          +Ie+      + + P+ + C N L +P  +++++ +
    KIAA1333   683 KPTP----------SIECL-----HVDFPVGNKCNNCLAIPITNTYKEFQ 717  

                   ekLllAIneeteGFgle<-*
                   e     I++      l    
    KIAA1333   718 ENMDFTIRN-----TLR    729  

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