hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23580772/chunk_1/iprscan-20080501-23580772.nocrc
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Query sequence: KIAA1335
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00176.13.fs SNF2 family N-terminal domain                 95.5    9.1e-26   1
PF00271.21.fs Helicase conserved C-terminal domain          87.6    5.6e-25   1
PF00271.21.ls Helicase conserved C-terminal domain          89.6    8.6e-24   1
PF07533.6.fs Associated with TFs and helicases             32.6    1.5e-08   1
PF07533.6.ls Associated with TFs and helicases             34.4    3.7e-07   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00176.13.fs   1/1       1    77 [.   266   355 .]    95.5  9.1e-26
PF00271.21.ls   1/1     144   223 ..     1    76 []    89.6  8.6e-24
PF00271.21.fs   1/1     144   223 ..     1    76 []    87.6  5.6e-25
PF07533.6.ls   1/1    1728  1768 ..     1    49 []    34.4  3.7e-07
PF07533.6.fs   1/1    1728  1768 ..     1    49 []    32.6  1.5e-08

Alignments of top-scoring domains:
PF00176.13.fs: domain 1 of 1, from 1 to 77: score 95.5, E = 9.1e-26
                   *->lkpflLRRlKkdveksLpppeKteyvlfcelsklQkelYkkflkees
                      lkp +LRRlK+dvek+L p  K+e+++++el+ +Qk++Y+ +l   +
    KIAA1335     1    LKPMMLRRLKDDVEKNLAP--KQETIIEVELTNIQKKYYRAIL---E 42   

                   kdvkaindserreggkeknegksrllnlimqLrKicNfHPyLf<-*
                   k++ ++ ++    + ++    + +l+n +m+LrK+cN HPyL+   
    KIAA1335    43 KNFSFLTKGA---NQHN----MPNLINTMMELRKCCN-HPYLI    77   

PF00271.21.ls: domain 1 of 1, from 144 to 223: score 89.6, E = 8.6e-24
                   *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr
                      +l ++ + + r++G+   + R++++++F + +s++ ++L++T+++g+
    KIAA1335   144    YLiQRRYTYERIDGRVRGNLRQAAIDRFCKPDSdrfVFLLCTRAGGL 190  

                   GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   Gi+++++++ I++d++wnp++++Q+  R++R+G   
    KIAA1335   191 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIG    223  

PF00271.21.fs: domain 1 of 1, from 144 to 223: score 87.6, E = 5.6e-25
                   *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr
                      +l ++ + + r++G+   + R++++++F + +s++ ++L++T+++g+
    KIAA1335   144    YLiQRRYTYERIDGRVRGNLRQAAIDRFCKPDSdrfVFLLCTRAGGL 190  

                   GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   Gi+++++++ I++d++wnp++++Q+  R++R+G   
    KIAA1335   191 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIG    223  

PF07533.6.ls: domain 1 of 1, from 1728 to 1768: score 34.4, E = 3.7e-07
                   *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr
                      +geeRVp+i++++G r+    + ++ +++++L+e+  +    + +Pr
    KIAA1335  1728    SGEERVPAIPKEPGLRG----FLPENKFNHTLAEPILR----DTGPR 1766 

                   st<-*
                   ++   
    KIAA1335  1767 RR    1768 

PF07533.6.fs: domain 1 of 1, from 1728 to 1768: score 32.6, E = 1.5e-08
                   *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr
                      +geeRVp+i++++G r+    + ++ +++++L+e+  +    + +Pr
    KIAA1335  1728    SGEERVPAIPKEPGLRG----FLPENKFNHTLAEPILR----DTGPR 1766 

                   st<-*
                   ++   
    KIAA1335  1767 RR    1768 

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