hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23580772/chunk_1/iprscan-20080501-23580772.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1335 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00490 92.7 4.4e-23 1 SM00592 50.6 2e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00490 1/1 139 223 .. 1 86 [] 92.7 4.4e-23 SM00592 1/1 1728 1768 .. 1 50 [] 50.6 2e-10 Alignments of top-scoring domains: SM00490: domain 1 of 1, from 139 to 223: score 92.7, E = 4.4e-23 *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki...kv d+l+++L ++ + + r++G+ + R++++++F k ++++ ++ KIAA1335 139 DILEDYLIQR----RYTYERIDGRVRGNLRQAAIDRFCKPDSdrfVF 181 LvaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-* L++T+++++G++++++d+ I++d +w+p++++Q+ R++R+G KIAA1335 182 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 223 SM00592: domain 1 of 1, from 1728 to 1768: score 50.6, E = 2e-10 *->dgeeRVpVinketGkkLtGddAPkakdLerWLeenPeyvvDlgevaP +geeRVp+i+ke+G ++ + ++++++++L+e++ + +++P KIAA1335 1728 SGEERVPAIPKEPGLRG----FLPENKFNHTLAEPILR-----DTGP 1765 rsa<-* r++ KIAA1335 1766 RRR 1768 //