hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00044750/chunk_1/iprscan-20080502-00044750.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1339 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 218.1 1.9e-62 8 PF00096.16.fs Zinc finger, C2H2 type 206.8 4.6e-59 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 2/8 165 187 .. 1 24 [] 20.8 0.0044 PF00096.16.ls 3/8 194 216 .. 1 24 [] 30.6 5.2e-06 PF00096.16.fs 4/9 194 216 .. 1 24 [] 28.6 7e-06 PF00096.16.ls 4/8 222 244 .. 1 24 [] 27.0 6.1e-05 PF00096.16.fs 5/9 222 244 .. 1 24 [] 25.0 5.4e-05 PF00096.16.ls 5/8 250 272 .. 1 24 [] 28.0 3.1e-05 PF00096.16.fs 6/9 250 272 .. 1 24 [] 26.0 3.1e-05 PF00096.16.ls 6/8 278 300 .. 1 24 [] 29.2 1.4e-05 PF00096.16.fs 7/9 278 300 .. 1 24 [] 27.2 1.6e-05 PF00096.16.fs 8/9 306 328 .. 1 24 [] 32.2 9e-07 PF00096.16.ls 7/8 306 328 .. 1 24 [] 34.2 4.3e-07 PF00096.16.fs 9/9 334 357 .. 1 24 [] 31.5 1.3e-06 PF00096.16.ls 8/8 334 357 .. 1 24 [] 33.5 7e-07 Alignments of top-scoring domains: PF00096.16.ls: domain 2 of 8, from 165 to 187: score 20.8, E = 0.0044 *->ykCpfdCgksFsrksnLkrHlrtH<-* +Cp +C ++F+++s L+ Hlr+H KIAA1339 165 PTCP-HCARTFTHPSRLTYHLRVH 187 PF00096.16.ls: domain 3 of 8, from 194 to 216: score 30.6, E = 5.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp dC k+F +++ L++H+r H KIAA1339 194 FPCP-DCPKRFADQARLTSHRRAH 216 PF00096.16.fs: domain 4 of 9, from 194 to 216: score 28.6, E = 7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp dC k+F +++ L++H+r H KIAA1339 194 FPCP-DCPKRFADQARLTSHRRAH 216 PF00096.16.ls: domain 4 of 8, from 222 to 244: score 27.0, E = 6.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg+sFs k +L H+r H KIAA1339 222 FRCA-QCGRSFSLKISLLLHQRGH 244 PF00096.16.fs: domain 5 of 9, from 222 to 244: score 25.0, E = 5.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg+sFs k +L H+r H KIAA1339 222 FRCA-QCGRSFSLKISLLLHQRGH 244 PF00096.16.ls: domain 5 of 8, from 250 to 272: score 28.0, E = 3.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +Cg F+ +s L rH+++H KIAA1339 250 FSCP-QCGIDFNGHSALIRHQMIH 272 PF00096.16.fs: domain 6 of 9, from 250 to 272: score 26.0, E = 3.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +Cg F+ +s L rH+++H KIAA1339 250 FSCP-QCGIDFNGHSALIRHQMIH 272 PF00096.16.ls: domain 6 of 8, from 278 to 300: score 29.2, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dC ksF rk++L +H+r H KIAA1339 278 YPCT-DCSKSFMRKEHLLNHRRLH 300 PF00096.16.fs: domain 7 of 9, from 278 to 300: score 27.2, E = 1.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dC ksF rk++L +H+r H KIAA1339 278 YPCT-DCSKSFMRKEHLLNHRRLH 300 PF00096.16.fs: domain 8 of 9, from 306 to 328: score 32.2, E = 9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +CgksF rk++L +H+r+H KIAA1339 306 FSCP-HCGKSFIRKHHLMKHQRIH 328 PF00096.16.ls: domain 7 of 8, from 306 to 328: score 34.2, E = 4.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +CgksF rk++L +H+r+H KIAA1339 306 FSCP-HCGKSFIRKHHLMKHQRIH 328 PF00096.16.fs: domain 9 of 9, from 334 to 357: score 31.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +Cg+sF+ k +Lk Hlr++H KIAA1339 334 YPCS-YCGRSFRYKQTLKDHLRSgH 357 PF00096.16.ls: domain 8 of 8, from 334 to 357: score 33.5, E = 7e-07 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +Cg+sF+ k +Lk Hlr++H KIAA1339 334 YPCS-YCGRSFRYKQTLKDHLRSgH 357 //