hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00063434/chunk_1/iprscan-20080502-00063434.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1340 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 125.2 1.7e-34 4 PF01344.15.fs Kelch motif 118.8 6.4e-33 4 PF07646.5.fs Kelch motif 41.0 2.7e-10 3 PF07646.5.ls Kelch motif 42.0 1.8e-09 3 PF07707.5.fs BTB And C-terminal Kelch 30.8 1.2e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07707.5.fs 1/1 66 105 .. 1 40 [. 30.8 1.2e-07 PF01344.15.fs 1/4 178 224 .. 1 45 [] 37.1 1.1e-09 PF01344.15.ls 1/4 178 224 .. 1 45 [] 39.1 1.4e-08 PF01344.15.ls 2/4 226 267 .. 1 45 [] 50.7 4.6e-12 PF07646.5.fs 2/3 226 267 .. 1 54 [] 17.2 0.0008 PF01344.15.fs 2/4 226 267 .. 1 45 [] 48.7 5.1e-13 PF07646.5.ls 2/3 226 267 .. 1 54 [] 19.0 0.016 PF01344.15.ls 3/4 269 314 .. 1 45 [] 21.0 0.0039 PF01344.15.fs 3/4 269 308 .. 1 39 [. 19.2 0.00013 PF01344.15.ls 4/4 316 371 .. 1 45 [] 14.5 0.083 Alignments of top-scoring domains: PF07707.5.fs: domain 1 of 1, from 66 to 105: score 30.8, E = 1.2e-07 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqL<-* CL ++r+A yg+++L+ea++rf+ +F eV+ + F L KIAA1340 66 CLEMYRLAQVYGLPDLQEACLRFMVVHFHEVLCKPQFHLL 105 PF01344.15.fs: domain 1 of 4, from 178 to 224: score 37.1, E = 1.1e-09 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp +g+g++ ld++++++GGy ++q + + +Y+p+tn+W +++sm+ KIAA1340 178 NVRGYGSAILDNYLFIVGGYRItsQEISAAHSYNPSTNEWLQVASMN 224 <-* KIAA1340 - - PF01344.15.ls: domain 1 of 4, from 178 to 224: score 39.1, E = 1.4e-08 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp +g+g++ ld++++++GGy ++q + + +Y+p+tn+W +++sm+ KIAA1340 178 NVRGYGSAILDNYLFIVGGYRItsQEISAAHSYNPSTNEWLQVASMN 224 <-* KIAA1340 - - PF01344.15.ls: domain 2 of 4, from 226 to 267: score 50.7, E = 4.6e-12 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- +Rs++ v+++ k+Y+iGG+ +++ve+Y+pe + W +++++p KIAA1340 226 KRSNFKLVAVNSKLYAIGGQA---VSNVECYNPEQDAWNFVAPLP 267 * KIAA1340 - - PF07646.5.fs: domain 2 of 3, from 226 to 267: score 17.2, E = 0.0008 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ +v +++kly +GG + s + +++pe +W KIAA1340 226 KRSNFKLVAVNSKLYAIGGQ------------AVSNVECYNPEQDAW 260 eklpalp<-* +++lp KIAA1340 261 NFVAPLP 267 PF01344.15.fs: domain 2 of 4, from 226 to 267: score 48.7, E = 5.1e-13 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- +Rs++ v+++ k+Y+iGG+ +++ve+Y+pe + W +++++p KIAA1340 226 KRSNFKLVAVNSKLYAIGGQA---VSNVECYNPEQDAWNFVAPLP 267 * KIAA1340 - - PF07646.5.ls: domain 2 of 3, from 226 to 267: score 19.0, E = 0.016 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ +v +++kly +GG + s + +++pe +W KIAA1340 226 KRSNFKLVAVNSKLYAIGGQ------------AVSNVECYNPEQDAW 260 eklpalp<-* +++lp KIAA1340 261 NFVAPLP 267 PF01344.15.ls: domain 3 of 4, from 269 to 314: score 21.0, E = 0.0039 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< p + ++++ ++gkiYviGGy+ + + ++ Y p+++ Wt + KIAA1340 269 PLAEFSACECKGKIYVIGGYTTrDRNMNILQYCPSSDMWTLFETCD 314 -* KIAA1340 - - PF01344.15.fs: domain 3 of 4, from 269 to 308: score 19.2, E = 0.00013 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWt<-* p + ++++ ++gkiYviGGy+ + + ++ Y p+++ Wt KIAA1340 269 PLAEFSACECKGKIYVIGGYTTrDRNMNILQYCPSSDMWT 308 PF01344.15.ls: domain 4 of 4, from 316 to 371: score 14.5, E = 0.083 *->pRsgagvvvldgkiYviGGydg...........qslnsvevYDpetn + + +v+++ iY++GG+ + ++++++++++ + +v +Y+++t KIAA1340 316 HIRKQQMVSVEETIYIVGGCLHelgpnrrssqsEDMLTVQSYNTVTR 362 tWtklpsmp<-* +W +l + + KIAA1340 363 QWLYLKENT 371 //