hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00063434/chunk_1/iprscan-20080502-00063434.nocrc
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Query sequence: KIAA1340
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                  88.2    9.7e-22   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00612      1/3     190   237 ..     1    55 []    36.3    4e-06
SM00612      2/3     238   280 ..     1    55 []    48.1  1.1e-09
SM00612      3/3     281   327 ..     1    55 []     3.8        8

Alignments of top-scoring domains:
SM00612: domain 1 of 3, from 190 to 237: score 36.3, E = 4e-06
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       +++vGG+  t       +q  + +  Y+p+tn+W +v+sM+++Rs+
    KIAA1340   190    YLFIVGGYRIT-------SQEISAAHSYNPSTNEWLQVASMNQKRSN 229  

                   agvaving<-*
                   + ++++n    
    KIAA1340   230 FKLVAVNS    237  

SM00612: domain 2 of 3, from 238 to 280: score 48.1, E = 1.1e-09
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      k+Y++GG            q++++vE+Y+pe + W  v+++p+p + 
    KIAA1340   238    KLYAIGG------------QAVSNVECYNPEQDAWNFVAPLPNPLAE 272  

                   agvaving<-*
                   ++++ ++g   
    KIAA1340   273 FSACECKG    280  

SM00612: domain 3 of 3, from 281 to 327: score 3.8, E = 8
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      kiYv+GG+           +r  ++ +Y p+++ W+      +    
    KIAA1340   281    KIYVIGGYTT--------RDRNMNILQYCPSSDMWTLFETCDVHIRK 319  

                   agvaving<-*
                     ++++++   
    KIAA1340   320 QQMVSVEE    327  

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