hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00095782/chunk_1/iprscan-20080502-00095782.nocrc
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Query sequence: KIAA1342
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00168.20.fs C2 domain                                      218.1    2.7e-64   2
PF00168.20.ls C2 domain                                      222.1    1.1e-63   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00168.20.fs   1/2     171   259 ..     1    88 []   107.4  2.3e-31
PF00168.20.ls   1/2     171   259 ..     1    88 []   109.4    1e-29
PF00168.20.fs   2/2     305   393 ..     1    88 []   110.8  2.2e-32
PF00168.20.ls   2/2     305   393 ..     1    88 []   112.8  9.4e-31

Alignments of top-scoring domains:
PF00168.20.fs: domain 1 of 2, from 171 to 259: score 107.4, E = 2.3e-31
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl
                       +V+++eA++Lp++D+ + +sDPY k++++++kk +k kT+v +ktl
    KIAA1342   171    FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK-HKVKTRVLRKTL 216  

                   NPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   +P ++EtFtF+++p+ + qe  L++++  +drf+rdd++Gev    
    KIAA1342   217 DPAFDETFTFYgIPYTQIQElALHFTILSFDRFSRDDIIGEVL    259  

PF00168.20.ls: domain 1 of 2, from 171 to 259: score 109.4, E = 1e-29
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl
                       +V+++eA++Lp++D+ + +sDPY k++++++kk +k kT+v +ktl
    KIAA1342   171    FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK-HKVKTRVLRKTL 216  

                   NPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   +P ++EtFtF+++p+ + qe  L++++  +drf+rdd++Gev    
    KIAA1342   217 DPAFDETFTFYgIPYTQIQElALHFTILSFDRFSRDDIIGEVL    259  

PF00168.20.fs: domain 2 of 2, from 305 to 393: score 110.8, E = 2.2e-32
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L+V v++A++Lp+ D ++g+sDPYVkv l   kk+ +kkkT+v+k t
    KIAA1342   305    LTVVVLKARHLPKSD-VSGLSDPYVKVNLYHAKKRiSKKKTHVKKCT 350  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                    N v+NE F+F++p++ l++ ++e+ V D+ r +r++++G+ +   
    KIAA1342   351 PNAVFNELFVFDIPCEGLEDiSVEFLVLDSERGSRNEVIGQLV    393  

PF00168.20.ls: domain 2 of 2, from 305 to 393: score 112.8, E = 9.4e-31
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L+V v++A++Lp+ D ++g+sDPYVkv l   kk+ +kkkT+v+k t
    KIAA1342   305    LTVVVLKARHLPKSD-VSGLSDPYVKVNLYHAKKRiSKKKTHVKKCT 350  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                    N v+NE F+F++p++ l++ ++e+ V D+ r +r++++G+ +   
    KIAA1342   351 PNAVFNELFVFDIPCEGLEDiSVEFLVLDSERGSRNEVIGQLV    393  

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