hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00095782/chunk_1/iprscan-20080502-00095782.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1342 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00239 156.1 3.6e-42 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/2 170 274 .. 1 92 [] 72.5 5.1e-17 SM00239 2/2 304 418 .. 1 92 [] 83.6 2.4e-20 Alignments of top-scoring domains: SM00239: domain 1 of 2, from 170 to 274: score 72.5, E = 5.1e-17 *->tLtvkiisArnLp.........DPYVkvs.........kTkvvkktl + v+i++Ar+Lp + + ++DPY+k++ + ++++ kT+v +ktl KIAA1342 170 AFVVNIKEARGLPamdeqsmtsDPYIKMTilpekkhkvKTRVLRKTL 216 sgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrvti P ++E tF+F+ +p ++ ++ L++++ ++++ +++d+iG+v i KIAA1342 217 ---DPAFDE---TFTFYGIPytqiqeLaLHFTILSFdrfsrdDIIGEVLI 260 ppnnahqhsadglihlsell.ggrh.kl<-* p ls ++ ++++ KIAA1342 261 P--------------LSGIElSEGKmLM 274 SM00239: domain 2 of 2, from 304 to 418: score 83.6, E = 2.4e-20 *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt tLtv +++Ar+Lp+++ ++ +DPYVkv + +++ +++kT+v+k+t KIAA1342 304 TLTVVVLKARHLPksdvsglsDPYVKVNlyhakkriskkKTHVKKCT 350 lsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvti N v+nE F+F++p+++ ++ ++e+ V D+++++++++iG++++ KIAA1342 351 P---NAVFNE---LFVFDIPCegledIsVEFLVLDSergsrnEVIGQLVL 394 ppnnahqhsadg..lihlsell.ggrh.kl<-* + +a+g++ +h++e+++ +r++ KIAA1342 395 G------AAAEGtgGEHWKEICdYPRRqIA 418 //