hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00113912/chunk_1/iprscan-20080502-00113912.nocrc
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Query sequence: KIAA1343
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00249.21.ls   Myb-like DNA-binding domain              90.9    3.7e-24   2
PF00249.21.fs   Myb-like DNA-binding domain              87.5    3.8e-23   2
PF01448.14.fs   ELM2 domain                              63.6      7e-18   1
PF01448.14.ls   ELM2 domain                              65.4    1.7e-16   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF01448.14.fs     1/1      24    86 ..     1    82 []    63.6    7e-18
PF01448.14.ls     1/1      24    86 ..     1    82 []    65.4  1.7e-16
PF00249.21.fs     1/2     111   156 ..     1    65 []    42.8    1e-10
PF00249.21.ls     1/2     111   156 ..     1    65 []    44.5  3.4e-10
PF00249.21.fs     2/2     312   357 ..     1    65 []    44.7  3.1e-11
PF00249.21.ls     2/2     312   357 ..     1    65 []    46.4  9.1e-11

Alignments of top-scoring domains:
PF01448.14.fs: domain 1 of 1, from 24 to 86: score 63.6, E = 7e-18
                   *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel
                       ++rVG +yQA++Pef    ++   + +++d+           +++l
    KIAA1343    24    VGMRVGAEYQARIPEF----DPGATKYTDKDN-----------GGML 55   

                   vWsPeDsqnqlddekideylrlarskksirtfera<-*
                   vWsP    +++ d+k+dey++ a++ k+++++e+a   
    KIAA1343    56 VWSPY---HSIPDAKLDEYIAIAKE-KHGYNVEQA    86   

PF01448.14.ls: domain 1 of 1, from 24 to 86: score 65.4, E = 1.7e-16
                   *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel
                       ++rVG +yQA++Pef    ++   + +++d+           +++l
    KIAA1343    24    VGMRVGAEYQARIPEF----DPGATKYTDKDN-----------GGML 55   

                   vWsPeDsqnqlddekideylrlarskksirtfera<-*
                   vWsP    +++ d+k+dey++ a++ k+++++e+a   
    KIAA1343    56 VWSPY---HSIPDAKLDEYIAIAKE-KHGYNVEQA    86   

PF00249.21.fs: domain 1 of 2, from 111 to 156: score 42.8, E = 1e-10
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++Wt e++ l+++a++ hGk            +++I ++l+     
    KIAA1343   111    PDEWTVEDKVLFEQAFSFHGKS-----------FHRIQQMLP----- 141  

                   nvlgrtaeqcklryykyk<-*
                      ++t  +++ +yy +k   
    KIAA1343   142 ---DKTIASLVKYYYSWK    156  

PF00249.21.ls: domain 1 of 2, from 111 to 156: score 44.5, E = 3.4e-10
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++Wt e++ l+++a++ hGk            +++I ++l+     
    KIAA1343   111    PDEWTVEDKVLFEQAFSFHGKS-----------FHRIQQMLP----- 141  

                   nvlgrtaeqcklryykyk<-*
                      ++t  +++ +yy +k   
    KIAA1343   142 ---DKTIASLVKYYYSWK    156  

PF00249.21.fs: domain 2 of 2, from 312 to 357: score 44.7, E = 3.1e-11
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                        rWt eE  l v++v+k+Gk+           ++ Ia+ +g     
    KIAA1343   312    NARWTTEEQLLAVQGVRKYGKD-----------FQAIADVIG----- 342  

                   nvlgrtaeqcklryykyk<-*
                      ++t+ q+k+++ +y+   
    KIAA1343   343 ---NKTVGQVKNFFVNYR    357  

PF00249.21.ls: domain 2 of 2, from 312 to 357: score 46.4, E = 9.1e-11
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                        rWt eE  l v++v+k+Gk+           ++ Ia+ +g     
    KIAA1343   312    NARWTTEEQLLAVQGVRKYGKD-----------FQAIADVIG----- 342  

                   nvlgrtaeqcklryykyk<-*
                      ++t+ q+k+++ +y+   
    KIAA1343   343 ---NKTVGQVKNFFVNYR    357  

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