HUGE

Gene/Protein Characteristic Table for KIAA1344

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00808
Accession No. :	AB037765
Description :
HUGO Gene Name :
Clone Name :	fj00476s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA1344
Source :	Human fetal brain
Note :	We replaced fj00476, former representative clones for KIAA1344 with fj00476s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 4552 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1713 bp

Genome contig ID gi51511730r_51867059
PolyA signal sequence
(AATAAA,-30)
+----*----+----*----+----*----+----
TTTTAAATAAAGTGTCTGGGTTTCAGAATACCTTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACAAGCCTCCTTTAGTCTCCACTGTGCCCTCTCGGACCACTCTCCCTCTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 r 51967059 52088963 21 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 858 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAI50206	99.9	Thioredoxin dom...	Homo sapiens
AAI44470	99.2	Unknown (protei...	Homo sapiens
XP_001103706	95.2	similar to Prot...	Macaca mulatta
XP_537446	87.1	similar to Prot...	Canis lupus fam...
EDL20686	75.6	RIKEN cDNA 5730...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013766 425 528 PF00085 Thioredoxin domain

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013766	425	528	PF00085	Thioredoxin domain

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 31 QLIMFSGFNVFRVGISFVIMCIF 53 PRIMARY 23

2 151 TLFDVNAIVAHVLFALLFSEVKY 173 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	31	QLIMFSGFNVFRVGISFVIMCIF	53	PRIMARY	23
2	151	TLFDVNAIVAHVLFALLFSEVKY	173	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTTGTTTTGGTGAATCTGCAT

Primer_r
: AATCATAAGCTGGAAGAGGAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1713 bp
Genome contig ID	gi51511730r_51867059
PolyA signal sequence (AATAAA,-30)	+--------+--------+----*----+---- TTTTAAATAAAGTGTCTGGGTTTCAGAATACCTTC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACAAGCCTCCTTTAGTCTCCACTGTGCCCTCTCGGACCACTCTCCCTCTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	r	51967059	52088963	21	99.4	Perfect prediction

Primer_f	: CTTGTTTTGGTGAATCTGCAT
Primer_r	: AATCATAAGCTGGAAGAGGAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1344

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information