hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00181277/chunk_1/iprscan-20080502-00181277.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1347 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01522 ATPase-IIA2_Ca: calcium-transporting P 2427.9 0 1 TIGR01494 ATPase_P-type: ATPase, P-type (transpo 349.7 1.6e-102 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01522 1/1 22 902 .. 1 856 [] 2427.9 0 TIGR01494 1/4 104 208 .. 1 105 [. 77.6 1.3e-20 TIGR01494 2/4 254 366 .. 125 234 .. 99.7 2.8e-27 TIGR01494 3/4 509 586 .. 294 366 .. 64.8 3e-17 TIGR01494 4/4 613 734 .. 363 478 .] 107.5 1.2e-29 Alignments of top-scoring domains: TIGR01522: domain 1 of 1, from 22 to 902: score 2427.9, E = 0 *->SvqYcelsVeEtcskLqTDlenGLsSsqEashRRklHGsNefkvEed S++++el+V+E++s+Lq+Dl+nGL+ ++E+shRR++HG+Nef+++ed KIAA1347 22 SKKASELPVSEVASILQADLQNGLN-KCEVSHRRAFHGWNEFDISED 67 EsLvKKFlsQFvkdPLILLLiaSAvvSvfMGNiDDAvSITLAIlIVVTVG E+L+KK++sQF k+PLI+LL+aSAv+Sv+M+++DDAvSIT+AIlIVVTV+ KIAA1347 68 EPLWKKYISQF-KNPLIMLLLASAVISVLMHQFDDAVSITVAILIVVTVA 116 FVQEYRSEKSLEALNKLVPpECHliRaGkeeHvLAStLVPGDLVilsvGD FVQEYRSEKSLE+L+KLVPpECH++R+Gk+eH+LA++LVPGD+V+lsvGD KIAA1347 117 FVQEYRSEKSLEELSKLVPPECHCVREGKLEHTLARDLVPGDTVCLSVGD 166 RvPADlRIvEAvdLSIDESNLTGEttPvkKssepiea.....LaeRsNIA RvPADlR++EAvdLSIDES+LTGEttP++K+++p++a ++++La+RsNIA KIAA1347 167 RVPADLRLFEAVDLSIDESSLTGETTPCSKVTAPQPAatngdLASRSNIA 216 fMGTLVReGhGkGIVVGTGsnTeFGaVFkMmqeiEkPKTPLQkSMDkLGK fMGTLVR+G++kG+V+GTG+n+eFG+VFkMmq++E+PKTPLQkSMD+LGK KIAA1347 217 FMGTLVRCGKAKGVVIGTGENSEFGEVFKMMQAEEAPKTPLQKSMDLLGK 266 dLSLvSFivIGvIcLVGifQGkdWLEMFTIsVSLAVAAIPEGLPIIVTVT +LS++SF++IG+I+LVG+++Gkd+LEMFTIsVSLAVAAIPEGLPI+VTVT KIAA1347 267 QLSFYSFGIIGIIMLVGWLLGKDILEMFTISVSLAVAAIPEGLPIVVTVT 316 LALGVLRMsKkrAIVRkLPSVETLGSVNVICSDKTGTLTkNHMTVTkiwT LALGV+RM+KkrAIV+kLP+VETLG++NVICSDKTGTLTkN+MTVT+i+T KIAA1347 317 LALGVMRMVKKRAIVKKLPIVETLGCCNVICSDKTGTLTKNEMTVTHIFT 366 vD....elnavsLd................tvavekiLeaGnLCNNakfr +D+ + e+++v++++ ++ +++ ++ ++av++i+eaG++CN+a++r KIAA1347 367 SDglhaEVTGVGYNqfgevivdgdvvhgfyNPAVSRIVEAGCVCNDAVIR 416 neadtllGnPTDvALIEllekFGLeDlReTykRvaEvPFSSeRKwMavkv n+ tl+G+PT++ALI+l++k+GL++l+++y+R+aE+PFSSe+KwMavk+ KIAA1347 417 NN--TLMGKPTEGALIALAMKMGLDGLQQDYIRKAEYPFSSEQKWMAVKC 464 vt....dskemvfvKGAyEqvlkyCtyYlkkdGkKTeeLTeeqkekiqee v+++++d++e++f+KGAyEqv+kyCt+Y++k G+ T++LT++q++++q+e KIAA1347 465 VHrtqqDRPEICFMKGAYEQVIKYCTTYQSK-GQ-TLTLTQQQRDVYQQE 512 aaeMaseGLRviAfAsgtekd.LvFlGLvGinDPPRPdVkeAverLltGG +a+M+s+GLRv+A+Asg+e+++L+FlGLvGi+DPPR++VkeAv++L+++G KIAA1347 513 KARMGSAGLRVLALASGPELGqLTFLGLVGIIDPPRTGVKEAVTTLIASG 562 VrviMITGDSeeTAvsIArrlGmpvkssk..eGekLDeMddqqLsevvdk V+++MITGDS+eTAv+IA+rlG+++k+s++ +Ge++D+Md+qqLs++v+k KIAA1347 563 VSIKMITGDSQETAVAIASRLGLYSKTSQsvSGEEIDAMDVQQLSQIVPK 612 VavFARasPeHKMKIVkaLQkrGDVVAMTGDGVNDAPALKLADIGvAMGr VavF+RasP+HKMKI+k+LQk+G+VVAMTGDGVNDA+ALK+ADIGvAMG+ KIAA1347 613 VAVFYRASPRHKMKIIKSLQKNGSVVAMTGDGVNDAVALKAADIGVAMGQ 662 tGTDVAKEAADMILTDDDFaTILSAIEEGKGIFNNIkNFiTFQLSTSvAA tGTDV+KEAADMIL+DDDF+TI+SAIEEGKGI+NNIkNF++FQLSTS+AA KIAA1347 663 TGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAA 712 LSLvAlaTvfglpNPLNAMQILWINILMDGPPAQSLGVEPVDkDVmkKPP L+L++laT++++pNPLNAMQILWINI+MDGPPAQSLGVEPVDkDV++KPP KIAA1347 713 LTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPP 762 RpRndkIlTkdLlkkvLvsAvIIvvGTllVFvkeMqEDGvvTaRDTTMTF R+++d+IlTk+L++k+Lvs++IIv+GTl+VF++e++ D+v+T+RDTTMTF KIAA1347 763 RNWKDSILTKNLILKILVSSIIIVCGTLFVFWRELR-DNVITPRDTTMTF 811 TCFVFFDMFNALACRSeTKSVFEIGfFSNrMFnYAVGgSliGQllVvYvP TCFVFFDMFNAL++RS+TKSVFEIG++SNrMF+YAV+gS++GQllV+Y+P KIAA1347 812 TCFVFFDMFNALSSRSQTKSVFEIGLCSNRMFCYAVLGSIMGQLLVIYFP 861 plQsvFQTEaLsikDlLlLLlitSSVlIVDEirKlyeRske<-* plQ+vFQTE+Lsi+DlL+LL++tSSV+IV+Ei+K++eRs+e KIAA1347 862 PLQKVFQTESLSILDLLFLLGLTSSVCIVAEIIKKVERSRE 902 TIGR01494: domain 1 of 4, from 104 to 208: score 77.6, E = 1.3e-20 *->viliivllfvlletlqkeaaedalrslkdkelnpqkvtvlrnggvei i +++l++v++ ++q++++e+ l++l++ l p+ ++++r+g+ e KIAA1347 104 SITVAILIVVTVAFVQEYRSEKSLEELSK--LVPPECHCVREGKLEH 148 s.skdlvvGDiVlvkkGdivPADgvLLs.gscyVdessLTGEsnpvlKtd + ++dlv+GD V ++ Gd+vPAD++L++ ++ +dessLTGE+ p K KIAA1347 149 TlARDLVPGDTVCLSVGDRVPADLRLFEaVDLSIDESSLTGETTPCSKVT 198 apfagtynfn<-* ap+ ++n++ KIAA1347 199 APQPAATNGD 208 TIGR01494: domain 2 of 4, from 254 to 366: score 99.7, E = 2.8e-27 *->ktplqrkldrlafifilfllllalsvflltliglwtffkiflralil ktplq +d l+ + + ++ +++l+ + ++++++ f ++++l KIAA1347 254 KTPLQKSMDLLGKQLSFYSFGIIGIIMLVGWLLGKDILEMFTISVSL 300 lviaiPiaLpvavtialavgdkrma...ilvrslnalEelGqvdyicsDK +v+aiP++Lp++vt++la+g rm +++++v++l+++E+lG++++icsDK KIAA1347 301 AVAAIPEGLPIVVTVTLALGVMRMVkkrAIVKKLPIVETLGCCNVICSDK 350 TGTLTenkmtfkkvyi<-* TGTLT+n+mt+ ++ + KIAA1347 351 TGTLTKNEMTVTHIFT 366 TIGR01494: domain 3 of 4, from 509 to 586: score 64.8, E = 3e-17 *->teehleelaseGlRtLavAykee.....llGltaieDpLredvketI ++++ + ++s GlR+La+A+ +e ++ ++lGl++i Dp+r +vke++ KIAA1347 509 YQQEKARMGSAGLRVLALASGPElgqltFLGLVGIIDPPRTGVKEAV 555 eeLkraGikvwMlTGDnveTAiaIAkecglf<-* +L ++G+ ++M+TGD +eTA+aIA ++gl+ KIAA1347 556 TTLIASGVSIKMITGDSQETAVAIASRLGLY 586 TIGR01494: domain 4 of 4, from 613 to 734: score 107.5, E = 1.2e-29 *->cglfARvsPeqKaeiVellqkrgaiVamiGDGaNDapALkaADVGia + +f R sP +K i++ lqk+g +Vam+GDG+NDa ALkaAD+G+a KIAA1347 613 VAVFYRASPRHKMKIIKSLQKNGSVVAMTGDGVNDAVALKAADIGVA 659 ig......AkaaaDivltddnlslivlllvhGRwtykrikklilyalyyn +g+++++ k+aaD++l dd++ +i ++++G+ +y++ik ++ ++l+ + KIAA1347 660 MGqtgtdvCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTS 709 liliillfvlsvinllftslpalal<-* +++ l++++ ++n ++ +++ +l KIAA1347 710 IAALTLISLATLMNFPNPLNAMQIL 734 //