hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00195538/chunk_1/iprscan-20080502-00195538.nocrc
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Query sequence: KIAA1348
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00481.12.fs Protein phosphatase 2C                         115.6    2.2e-32   2
PF00481.12.ls Protein phosphatase 2C                          76.9    5.9e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00481.12.ls   1/1     121   503 ..     1   303 []    76.9  5.9e-20
PF00481.12.fs   2/2     281   443 ..   118   269 ..   112.7  1.5e-31

Alignments of top-scoring domains:
PF00481.12.ls: domain 1 of 1, from 121 to 503: score 76.9, E = 5.9e-20
                   *->ldvgvsrmq.gwrksmeDahialknlnssssgkdsisffavfDghgG
                      + + + ++q  +  + eD+ +           + +   f++fDghgG
    KIAA1348   121    SVLRFESNQlAANSPVEDRRGVAS------CLQTNGLMFGIFDGHGG 161  

                   sqaakyagkhlekaltilaerksfpegnpnE.w.kl..............
                   + +a+  +++l      +a   + +++   E+ +++ ++ ++  +  +  
    KIAA1348   162 HACAQAVSERLF---YYVAVSLMSHQTL--EhMeGAmesmkpllpilhwl 206  

                   ..................................sdledalrksfleadt
                   ++++++  ++ ++ + ++ +   ++  + + + +   e+al +sf++   
    KIAA1348   207 khpgdsiykdvtsvhldhlrvywqelldlhmemgLSIEEALMYSFQR--L 254  

                   deelrsaadsan......h.vltkedlssGsTAvvalirgqkklLyvANv
                   d+ + +  +++++ +++  + l+ +   sG+TA +a + g +  L+vAN+
    KIAA1348   255 DSDISL--EIQApledevTrNLSLQVAFSGATACMAHVDGIH--LHVANA 300  

                   GDSravLcrngnaikl.vtqLtedHkpsdedEkrRIeaaGGf......vs
                   GD+ra+L+ + + + ++  +Lt+dH + +++E +R+++++  +++++ ++
    KIAA1348   301 GDCRAILGVQEDNGMWsCLPLTRDHNAWNQAELSRLKREHPEsedrtiIM 350  

                   rvsgngRvnGvfLavSRAfGDfelKpnvtlgpels.l.e..........r
                       + R+ Gv L   RAfGD++lK    + + +++  e++ +++  + +
    KIAA1348   351 ----EDRLLGV-LIPCRAFGDVQLKW---SKELQRsIlErgfntealniY 392  

                   Gifse.e...qpVsaePdvtsstkiteskDeFliLAcDGlWDvvsdqeav
                     ++++  ++++ +aeP+vt ++++ ++ D+Fl+LA+DGlWD++s++++v
    KIAA1348   393 QFTPPhYytpPYLTAEPEVT-YHRLRPQ-DKFLVLASDGLWDMLSNEDVV 440  

                   divrselsdgn.ks.........................agspmeaaekL
                    +v  +l + +  +++  +++ + +  ++   +++ ++  ++ + aa++L
    KIAA1348   441 RLVVGHLAEADwHKtdlaqrpanlglmqslllqrkasglHEADQNAATRL 490  

                   vdeAiargseDni<-*
                   +++Ai ++    +   
    KIAA1348   491 IRHAIGNNEYGEM    503  

PF00481.12.fs: domain 2 of 2, from 281 to 443: score 112.7, E = 1.5e-31
                   *->sGsTAvvalirgqkklLyvANvGDSravLcrngnaikl.vtqLtedH
                      sG+TA +a + g +  L+vAN+GD+ra+L+ + + + ++  +Lt+dH
    KIAA1348   281    SGATACMAHVDGIH--LHVANAGDCRAILGVQEDNGMWsCLPLTRDH 325  

                   kpsdedEkrRIeaaGGf......vsrvsgngRvnGvfLavSRAfGDfelK
                    + +++E +R+++++  +++++ ++    + R+ Gv L   RAfGD++lK
    KIAA1348   326 NAWNQAELSRLKREHPEsedrtiIM----EDRLLGV-LIPCRAFGDVQLK 370  

                   pnvtlgpels.l.e..........rGifse.e...qpVsaePdvtsstki
                       + + +++  e++ +++  + +  ++++  ++++ +aeP+vt ++++
    KIAA1348   371 W---SKELQRsIlErgfntealniYQFTPPhYytpPYLTAEPEVT-YHRL 416  

                   teskDeFliLAcDGlWDvvsdqeavdiv<-*
                    ++ D+Fl+LA+DGlWD++s++++v +v   
    KIAA1348   417 RPQ-DKFLVLASDGLWDMLSNEDVVRLV    443  

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