hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00214206/chunk_1/iprscan-20080502-00214206.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1349 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 698.1 5.9e-207 21 PF00096.16.fs Zinc finger, C2H2 type 663.7 1.3e-196 21 PF01096.9.fs Transcription factor S-II (TFIIS) 121.1 8.2e-37 20 PF01286.9.fs XPA protein N-terminal 89.7 8e-25 18 PF07754.2.fs Domain of unknown function (DUF1610) 50.2 1.9e-12 17 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 34.0 3.6e-10 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 1/21 163 185 .. 1 24 [] 28.2 2.7e-05 PF00096.16.fs 1/21 163 185 .. 1 24 [] 26.2 2.8e-05 PF00096.16.fs 2/21 191 213 .. 1 24 [] 34.3 2.6e-07 PF00096.16.ls 2/21 191 213 .. 1 24 [] 36.3 9.8e-08 PF00096.16.fs 3/21 219 241 .. 1 24 [] 31.0 1.8e-06 PF00096.16.ls 3/21 219 241 .. 1 24 [] 33.0 9.9e-07 PF00096.16.ls 4/21 247 269 .. 1 24 [] 18.7 0.02 PF00096.16.fs 4/21 247 268 .. 1 23 [. 23.6 0.00012 PF00096.16.fs 5/21 275 297 .. 1 24 [] 36.4 8.2e-08 PF00096.16.ls 5/21 275 297 .. 1 24 [] 38.3 2.4e-08 PF00096.16.ls 6/21 303 325 .. 1 24 [] 38.1 2.9e-08 PF00096.16.fs 6/21 303 325 .. 1 24 [] 36.1 9.6e-08 PF00096.16.fs 7/21 331 353 .. 1 24 [] 25.6 4e-05 PF00096.16.ls 7/21 331 353 .. 1 24 [] 27.5 4.3e-05 PF00096.16.fs 8/21 359 381 .. 1 24 [] 34.3 2.7e-07 PF00096.16.ls 8/21 359 381 .. 1 24 [] 36.3 1e-07 PF00096.16.ls 9/21 387 409 .. 1 24 [] 34.1 4.5e-07 PF00096.16.fs 9/21 387 409 .. 1 24 [] 32.1 9.3e-07 PF00096.16.fs 10/21 415 437 .. 1 24 [] 25.0 5.6e-05 PF00096.16.ls 10/21 415 437 .. 1 24 [] 27.0 6.3e-05 PF00096.16.ls 11/21 443 465 .. 1 24 [] 36.1 1.1e-07 PF00096.16.fs 11/21 443 465 .. 1 24 [] 34.1 3e-07 PF00096.16.ls 12/21 471 493 .. 1 24 [] 30.0 7.8e-06 PF00096.16.fs 12/21 471 493 .. 1 24 [] 28.0 9.8e-06 PF00096.16.ls 13/21 499 521 .. 1 24 [] 32.1 1.8e-06 PF00096.16.fs 13/21 499 521 .. 1 24 [] 30.1 2.9e-06 PF00096.16.ls 14/21 527 549 .. 1 24 [] 37.7 3.6e-08 PF00096.16.fs 14/21 527 549 .. 1 24 [] 35.8 1.2e-07 PF00096.16.ls 15/21 555 577 .. 1 24 [] 34.4 3.6e-07 PF00096.16.fs 15/21 555 577 .. 1 24 [] 32.5 7.7e-07 PF00096.16.fs 16/21 583 605 .. 1 24 [] 35.1 1.7e-07 PF00096.16.ls 16/21 583 605 .. 1 24 [] 37.0 5.9e-08 PF00096.16.ls 17/21 611 633 .. 1 24 [] 32.1 1.8e-06 PF00096.16.fs 17/21 611 633 .. 1 24 [] 30.1 2.9e-06 PF00096.16.ls 18/21 639 661 .. 1 24 [] 35.7 1.5e-07 PF00096.16.fs 18/21 639 661 .. 1 24 [] 33.7 3.8e-07 PF00096.16.ls 19/21 667 689 .. 1 24 [] 29.9 8.2e-06 PF00096.16.fs 19/21 667 689 .. 1 24 [] 27.9 1e-05 PF00096.16.fs 20/21 695 717 .. 1 24 [] 35.0 1.8e-07 PF00096.16.ls 20/21 695 717 .. 1 24 [] 36.9 6.3e-08 PF00096.16.fs 21/21 723 745 .. 1 24 [] 36.8 6.5e-08 PF00096.16.ls 21/21 723 745 .. 1 24 [] 38.7 1.8e-08 Alignments of top-scoring domains: PF00096.16.ls: domain 1 of 21, from 163 to 185: score 28.2, E = 2.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ C k+F +s L +H+rtH KIAA1349 163 YKCS-TCEKAFHYRSLLIQHQRTH 185 PF00096.16.fs: domain 1 of 21, from 163 to 185: score 26.2, E = 2.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ C k+F +s L +H+rtH KIAA1349 163 YKCS-TCEKAFHYRSLLIQHQRTH 185 PF00096.16.fs: domain 2 of 21, from 191 to 213: score 34.3, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s L +H+++H KIAA1349 191 YECN-ECGKTFSQPSYLSQHKKIH 213 PF00096.16.ls: domain 2 of 21, from 191 to 213: score 36.3, E = 9.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s L +H+++H KIAA1349 191 YECN-ECGKTFSQPSYLSQHKKIH 213 PF00096.16.fs: domain 3 of 21, from 219 to 241: score 31.0, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s+L H+r+H KIAA1349 219 YKCN-ECGKAFIASSSLMVHQRIH 241 PF00096.16.ls: domain 3 of 21, from 219 to 241: score 33.0, E = 9.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s+L H+r+H KIAA1349 219 YKCN-ECGKAFIASSSLMVHQRIH 241 PF00096.16.ls: domain 4 of 21, from 247 to 269: score 18.7, E = 0.02 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs+ + L++H+r+ KIAA1349 247 YQCN-VCGKSFSQCARLNQHQRIQ 269 PF00096.16.fs: domain 4 of 21, from 247 to 268: score 23.6, E = 0.00012 *->ykCpfdCgksFsrksnLkrHlrt<-* y+C+ +CgksFs+ + L++H+r+ KIAA1349 247 YQCN-VCGKSFSQCARLNQHQRI 268 PF00096.16.fs: domain 5 of 21, from 275 to 297: score 36.4, E = 8.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ks L rH+ tH KIAA1349 275 YKCS-ECGKAFSDKSKLARHQETH 297 PF00096.16.ls: domain 5 of 21, from 275 to 297: score 38.3, E = 2.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ks L rH+ tH KIAA1349 275 YKCS-ECGKAFSDKSKLARHQETH 297 PF00096.16.ls: domain 6 of 21, from 303 to 325: score 38.1, E = 2.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk+F++ks L H++tH KIAA1349 303 YKCD-DCGKAFRNKSYLSVHQKTH 325 PF00096.16.fs: domain 6 of 21, from 303 to 325: score 36.1, E = 9.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk+F++ks L H++tH KIAA1349 303 YKCD-DCGKAFRNKSYLSVHQKTH 325 PF00096.16.fs: domain 7 of 21, from 331 to 353: score 25.6, E = 4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF++ ++ H+r+H KIAA1349 331 YQCN-ECGKSFKNTTIFNVHQRIH 353 PF00096.16.ls: domain 7 of 21, from 331 to 353: score 27.5, E = 4.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF++ ++ H+r+H KIAA1349 331 YQCN-ECGKSFKNTTIFNVHQRIH 353 PF00096.16.fs: domain 8 of 21, from 359 to 381: score 34.3, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+++++s+L H+rtH KIAA1349 359 FRCN-ECGKAYRSNSSLIVHIRTH 381 PF00096.16.ls: domain 8 of 21, from 359 to 381: score 36.3, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+++++s+L H+rtH KIAA1349 359 FRCN-ECGKAYRSNSSLIVHIRTH 381 PF00096.16.ls: domain 9 of 21, from 387 to 409: score 34.1, E = 4.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r +n++ H+r+H KIAA1349 387 YECN-ECGKAFNRIANFTEHQRIH 409 PF00096.16.fs: domain 9 of 21, from 387 to 409: score 32.1, E = 9.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r +n++ H+r+H KIAA1349 387 YECN-ECGKAFNRIANFTEHQRIH 409 PF00096.16.fs: domain 10 of 21, from 415 to 437: score 25.0, E = 5.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + s L+ H r+H KIAA1349 415 YKCN-ECGKAFINYSCLTVHHRMH 437 PF00096.16.ls: domain 10 of 21, from 415 to 437: score 27.0, E = 6.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + s L+ H r+H KIAA1349 415 YKCN-ECGKAFINYSCLTVHHRMH 437 PF00096.16.ls: domain 11 of 21, from 443 to 465: score 36.1, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F r+s+L H+r+H KIAA1349 443 YKCT-ECGKAFMRSSSLIIHQRIH 465 PF00096.16.fs: domain 11 of 21, from 443 to 465: score 34.1, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F r+s+L H+r+H KIAA1349 443 YKCT-ECGKAFMRSSSLIIHQRIH 465 PF00096.16.ls: domain 12 of 21, from 471 to 493: score 30.0, E = 7.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg+sF+ ks+L+ H+r+H KIAA1349 471 YLCN-ECGESFRIKSHLTVHQRIH 493 PF00096.16.fs: domain 12 of 21, from 471 to 493: score 28.0, E = 9.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg+sF+ ks+L+ H+r+H KIAA1349 471 YLCN-ECGESFRIKSHLTVHQRIH 493 PF00096.16.ls: domain 13 of 21, from 499 to 521: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dC ++F+ nLk H+++H KIAA1349 499 YKCT-DCERAFTKMVNLKEHQKIH 521 PF00096.16.fs: domain 13 of 21, from 499 to 521: score 30.1, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dC ++F+ nLk H+++H KIAA1349 499 YKCT-DCERAFTKMVNLKEHQKIH 521 PF00096.16.ls: domain 14 of 21, from 527 to 549: score 37.7, E = 3.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC dCgksF++ks L H+rtH KIAA1349 527 YKCY-DCGKSFRTKSYLIVHQRTH 549 PF00096.16.fs: domain 14 of 21, from 527 to 549: score 35.8, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC dCgksF++ks L H+rtH KIAA1349 527 YKCY-DCGKSFRTKSYLIVHQRTH 549 PF00096.16.ls: domain 15 of 21, from 555 to 577: score 34.4, E = 3.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F++ s+L+ H+r+H KIAA1349 555 YKCN-ECEKAFTNTSQLTVHQRRH 577 PF00096.16.fs: domain 15 of 21, from 555 to 577: score 32.5, E = 7.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F++ s+L+ H+r+H KIAA1349 555 YKCN-ECEKAFTNTSQLTVHQRRH 577 PF00096.16.fs: domain 16 of 21, from 583 to 605: score 35.1, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s +++H+rtH KIAA1349 583 YKCN-ECGKVFTSNSGFNTHQRTH 605 PF00096.16.ls: domain 16 of 21, from 583 to 605: score 37.0, E = 5.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s +++H+rtH KIAA1349 583 YKCN-ECGKVFTSNSGFNTHQRTH 605 PF00096.16.ls: domain 17 of 21, from 611 to 633: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ dCgk+Fs+ + + H+++H KIAA1349 611 FKCN-DCGKAFSQMVHVTEHQKIH 633 PF00096.16.fs: domain 17 of 21, from 611 to 633: score 30.1, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ dCgk+Fs+ + + H+++H KIAA1349 611 FKCN-DCGKAFSQMVHVTEHQKIH 633 PF00096.16.ls: domain 18 of 21, from 639 to 661: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r s L+ H+rtH KIAA1349 639 YKCD-VCGKAFRRGSYLTVHWRTH 661 PF00096.16.fs: domain 18 of 21, from 639 to 661: score 33.7, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r s L+ H+rtH KIAA1349 639 YKCD-VCGKAFRRGSYLTVHWRTH 661 PF00096.16.ls: domain 19 of 21, from 667 to 689: score 29.9, E = 8.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk + + s+L+ H+r+H KIAA1349 667 YTCK-ECGKGCITLSQLTLHQRIH 689 PF00096.16.fs: domain 19 of 21, from 667 to 689: score 27.9, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk + + s+L+ H+r+H KIAA1349 667 YTCK-ECGKGCITLSQLTLHQRIH 689 PF00096.16.fs: domain 20 of 21, from 695 to 717: score 35.0, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+++ Hlr+H KIAA1349 695 YKCE-ECGKAFRTNSDFTVHLRMH 717 PF00096.16.ls: domain 20 of 21, from 695 to 717: score 36.9, E = 6.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+++ Hlr+H KIAA1349 695 YKCE-ECGKAFRTNSDFTVHLRMH 717 PF00096.16.fs: domain 21 of 21, from 723 to 745: score 36.8, E = 6.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L+ H+r+H KIAA1349 723 YKCN-ECGKAFRSSSSLTVHQRIH 745 PF00096.16.ls: domain 21 of 21, from 723 to 745: score 38.7, E = 1.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L+ H+r+H KIAA1349 723 YKCN-ECGKAFRSSSSLTVHQRIH 745 //