hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00295672/chunk_1/iprscan-20080502-00295672.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1354 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 239.5 6.8e-69 6 PF01344.15.fs Kelch motif 228.4 1.5e-65 6 PF07707.5.ls BTB And C-terminal Kelch 133.1 6.9e-37 1 PF07707.5.fs BTB And C-terminal Kelch 131.2 2.7e-36 1 PF00651.21.ls BTB/POZ domain 115.9 1e-31 1 PF00651.21.fs BTB/POZ domain 114.2 2.4e-31 1 PF07646.5.ls Kelch motif 101.4 2.6e-27 6 PF07646.5.fs Kelch motif 95.6 1.4e-25 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.ls 1/1 55 164 .. 1 135 [] 115.9 1e-31 PF00651.21.fs 1/1 55 164 .. 1 135 [] 114.2 2.4e-31 PF07707.5.fs 1/1 169 270 .. 1 103 [] 131.2 2.7e-36 PF07707.5.ls 1/1 169 270 .. 1 103 [] 133.1 6.9e-37 PF01344.15.ls 1/6 302 349 .. 1 45 [] 8.8 0.36 PF01344.15.ls 2/6 351 401 .. 1 45 [] 58.7 1.8e-14 PF07646.5.fs 2/6 351 401 .. 1 54 [] 20.3 0.00012 PF01344.15.fs 2/6 351 401 .. 1 45 [] 56.7 2.8e-15 PF07646.5.ls 2/6 351 401 .. 1 54 [] 22.3 0.0016 PF01344.15.fs 3/6 403 448 .. 1 45 [] 48.8 5e-13 PF01344.15.ls 3/6 403 448 .. 1 45 [] 50.8 4.4e-12 PF01344.15.ls 4/6 450 495 .. 1 45 [] 45.8 1.4e-10 PF01344.15.fs 4/6 450 495 .. 1 45 [] 43.8 1.3e-11 PF07646.5.ls 4/6 450 495 .. 1 54 [] 29.3 1.2e-05 PF07646.5.fs 4/6 450 495 .. 1 54 [] 27.5 1.3e-06 PF01344.15.fs 5/6 497 547 .. 1 45 [] 36.4 1.6e-09 PF01344.15.ls 5/6 497 547 .. 1 45 [] 38.4 2.2e-08 PF07646.5.ls 5/6 497 547 .. 1 54 [] 16.4 0.093 PF01344.15.ls 6/6 549 596 .. 1 45 [] 37.0 5.9e-08 PF07646.5.fs 6/6 549 596 .. 1 54 [] 23.1 2e-05 PF07646.5.ls 6/6 549 596 .. 1 54 [] 25.0 0.00024 PF01344.15.fs 6/6 551 596 .. 3 45 .] 35.7 2.6e-09 Alignments of top-scoring domains: PF00651.21.ls: domain 1 of 1, from 55 to 164: score 115.9, E = 1e-31 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +++lr +g lcDVtLv gdg ++ f++H+a a++S+YFka+ KIAA1354 55 FDQLRIEGLLCDVTLVPGDG------DEIFPVHRAMMASASDYFKAM 95 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ftg+ ++e+ + i l +v+ ++ +++fiYt++ls++ KIAA1354 96 FTGG-----MKEQDLMC--IKLHGVNKVGLKKIIDFIYTAKLSLN----- 133 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* ++n++d L+aA ++lqi + d C fli KIAA1354 134 ------MDNLQDTLEAA-SFLQILPVLDFCKVFLISGV 164 PF00651.21.fs: domain 1 of 1, from 55 to 164: score 114.2, E = 2.4e-31 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +++lr +g lcDVtLv gdg ++ f++H+a a++S+YFka+ KIAA1354 55 FDQLRIEGLLCDVTLVPGDG------DEIFPVHRAMMASASDYFKAM 95 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ftg+ ++e+ + i l +v+ ++ +++fiYt++ls++ KIAA1354 96 FTGG-----MKEQDLMC--IKLHGVNKVGLKKIIDFIYTAKLSLN----- 133 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* ++n++d L+aA ++lqi + d C fli KIAA1354 134 ------MDNLQDTLEAA-SFLQILPVLDFCKVFLISGV 164 PF07707.5.fs: domain 1 of 1, from 169 to 270: score 131.2, E = 2.7e-36 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ + r+A +y++ e+ +++++fil+nF++++++ EFl L++e+L + KIAA1354 169 CVEVGRIANTYNLIEVDKYVNNFILKNFPALLSTGEFLKLPFERLAF 215 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +Lss++L ++E e+f+A++rW++ + + R +++++L++++R+pL++p+ KIAA1354 216 VLSSNSLKHCTELELFKAACRWLRLEDP-RMDYAAKLMKNIRFPLMTPQD 264 Llevve<-* L ++v+ KIAA1354 265 LINYVQ 270 PF07707.5.ls: domain 1 of 1, from 169 to 270: score 133.1, E = 6.9e-37 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ + r+A +y++ e+ +++++fil+nF++++++ EFl L++e+L + KIAA1354 169 CVEVGRIANTYNLIEVDKYVNNFILKNFPALLSTGEFLKLPFERLAF 215 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +Lss++L ++E e+f+A++rW++ + + R +++++L++++R+pL++p+ KIAA1354 216 VLSSNSLKHCTELELFKAACRWLRLEDP-RMDYAAKLMKNIRFPLMTPQD 264 Llevve<-* L ++v+ KIAA1354 265 LINYVQ 270 PF01344.15.ls: domain 1 of 6, from 302 to 349: score 8.8, E = 0.36 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm + ++ + ++ GG+ ++ + ++ +YD + ++W+ l++m KIAA1354 302 QSDRTAIRSDSTHLVTLGGVLRqqlVVSKELRMYDERAQEWRSLAPM 348 p<-* KIAA1354 349 D 349 PF01344.15.ls: domain 2 of 6, from 351 to 401: score 58.7, E = 1.8e-14 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl pR+ +g++v+++ +Yv+GG+++ ++++++++++v+++Dp+ n+W ++ KIAA1354 351 PRYQHGIAVIGNFLYVVGGQSNydtkgkTAVDTVFRFDPRYNKWMQV 397 psmp<-* +s++ KIAA1354 398 ASLN 401 PF07646.5.fs: domain 2 of 6, from 351 to 401: score 20.3, E = 0.00012 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pry+h ++v+g+ lyvvGG + ++ g + +++ ++dp+ n+W KIAA1354 351 PRYQHGIAVIGNFLYVVGGQ---SNYDTKGKTAVDTVFRFDPRYNKW 394 eklpalp<-* +++l KIAA1354 395 MQVASLN 401 PF01344.15.fs: domain 2 of 6, from 351 to 401: score 56.7, E = 2.8e-15 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl pR+ +g++v+++ +Yv+GG+++ ++++++++++v+++Dp+ n+W ++ KIAA1354 351 PRYQHGIAVIGNFLYVVGGQSNydtkgkTAVDTVFRFDPRYNKWMQV 397 psmp<-* +s++ KIAA1354 398 ASLN 401 PF07646.5.ls: domain 2 of 6, from 351 to 401: score 22.3, E = 0.0016 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pry+h ++v+g+ lyvvGG + ++ g + +++ ++dp+ n+W KIAA1354 351 PRYQHGIAVIGNFLYVVGGQ---SNYDTKGKTAVDTVFRFDPRYNKW 394 eklpalp<-* +++l KIAA1354 395 MQVASLN 401 PF01344.15.fs: domain 3 of 6, from 403 to 448: score 48.8, E = 5e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++ +l+g++Y++GG++ l +ve+Y+p+ n+W++++ m+ KIAA1354 403 KRTFFHLSALKGHLYAVGGRSAaGELATVECYNPRMNEWSYVAKMS 448 -* KIAA1354 - - PF01344.15.ls: domain 3 of 6, from 403 to 448: score 50.8, E = 4.4e-12 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++ +l+g++Y++GG++ l +ve+Y+p+ n+W++++ m+ KIAA1354 403 KRTFFHLSALKGHLYAVGGRSAaGELATVECYNPRMNEWSYVAKMS 448 -* KIAA1354 - - PF01344.15.ls: domain 4 of 6, from 450 to 495: score 45.8, E = 1.4e-10 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< p +g++ +v++g++Y+ GG + +++ n ++Dp+t++W + ++m+ KIAA1354 450 PHYGHAGTVYGGLMYISGGITHdTFQNELMCFDPDTDKWMQKAPMT 495 -* KIAA1354 - - PF01344.15.fs: domain 4 of 6, from 450 to 495: score 43.8, E = 1.3e-11 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< p +g++ +v++g++Y+ GG + +++ n ++Dp+t++W + ++m+ KIAA1354 450 PHYGHAGTVYGGLMYISGGITHdTFQNELMCFDPDTDKWMQKAPMT 495 -* KIAA1354 - - PF07646.5.ls: domain 4 of 6, from 450 to 495: score 29.3, E = 1.2e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p+y+ha +v+gg +y++GG+ d +++ l+++dp+t +W KIAA1354 450 PHYGHAGTVYGGLMYISGGI--------THDTFQNELMCFDPDTDKW 488 eklpalp<-* +++ KIAA1354 489 MQKAPMT 495 PF07646.5.fs: domain 4 of 6, from 450 to 495: score 27.5, E = 1.3e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p+y+ha +v+gg +y++GG+ d +++ l+++dp+t +W KIAA1354 450 PHYGHAGTVYGGLMYISGGI--------THDTFQNELMCFDPDTDKW 488 eklpalp<-* +++ KIAA1354 489 MQKAPMT 495 PF01344.15.fs: domain 5 of 6, from 497 to 547: score 36.4, E = 1.6e-09 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl R ++++++++k+YviGG +++++ + s+e+Y+p+ ++Wt++ KIAA1354 497 VRGLHCMCTVGDKLYVIGGNHFrgtsdyDDVLSCEYYSPTLDQWTPI 543 psmp<-* + m KIAA1354 544 AAML 547 PF01344.15.ls: domain 5 of 6, from 497 to 547: score 38.4, E = 2.2e-08 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl R ++++++++k+YviGG +++++ + s+e+Y+p+ ++Wt++ KIAA1354 497 VRGLHCMCTVGDKLYVIGGNHFrgtsdyDDVLSCEYYSPTLDQWTPI 543 psmp<-* + m KIAA1354 544 AAML 547 PF07646.5.ls: domain 5 of 6, from 497 to 547: score 16.4, E = 0.093 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r+ h ++++g+klyv+GG + rgt + d+++s ++ p +W KIAA1354 497 VRGLHCMCTVGDKLYVIGGN--HFRGTSDYDDVLS-CEYYSPTLDQW 540 eklpalp<-* ++++a+ KIAA1354 541 TPIAAML 547 PF01344.15.ls: domain 6 of 6, from 549 to 596: score 37.0, E = 5.9e-08 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm s +gv+v+++kiYv+GGy+ +++ + v +YDpe+++W+k+ ++ KIAA1354 549 GQSDVGVAVFENKIYVVGGYSWnnrCMVEIVQKYDPEKDEWHKVFDL 595 p<-* p KIAA1354 596 P 596 PF07646.5.fs: domain 6 of 6, from 549 to 596: score 23.1, E = 2e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +++ + ++v ++k+yvvGG+ + n+ + ++ +dpe+ +W KIAA1354 549 GQSDVGVAVFENKIYVVGGY------SWNNRCMVEIVQKYDPEKDEW 589 eklpalp<-* +k+ +lp KIAA1354 590 HKVFDLP 596 PF07646.5.ls: domain 6 of 6, from 549 to 596: score 25.0, E = 0.00024 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +++ + ++v ++k+yvvGG+ + n+ + ++ +dpe+ +W KIAA1354 549 GQSDVGVAVFENKIYVVGGY------SWNNRCMVEIVQKYDPEKDEW 589 eklpalp<-* +k+ +lp KIAA1354 590 HKVFDLP 596 PF01344.15.fs: domain 6 of 6, from 551 to 596: score 35.7, E = 2.6e-09 *->sgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsmp< s +gv+v+++kiYv+GGy+ +++ + v +YDpe+++W+k+ ++p KIAA1354 551 SDVGVAVFENKIYVVGGYSWnnrCMVEIVQKYDPEKDEWHKVFDLP 596 -* KIAA1354 - - //