hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00295672/chunk_1/iprscan-20080502-00295672.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1354 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00612 207.3 1.3e-57 6 SM00225 88.1 1e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00225 1/1 65 164 .. 1 114 [] 88.1 1e-21 SM00612 1/6 314 362 .. 1 55 [] 26.2 0.0045 SM00612 2/6 363 414 .. 1 55 [] 34.2 1.7e-05 SM00612 3/6 415 461 .. 1 55 [] 54.4 1.5e-11 SM00612 4/6 462 508 .. 1 55 [] 35.3 8.2e-06 SM00612 5/6 509 560 .. 1 55 [] 37.8 1.5e-06 SM00612 6/6 561 609 .. 1 55 [] 19.4 0.13 Alignments of top-scoring domains: SM00225: domain 1 of 1, from 65 to 164: score 88.1, E = 1e-21 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. cDvtlv g+ gd ++f++ H+a a+ S+yFka+f+++ KIAA1354 65 CDVTLVPGD---GD----EIFPV--HRAMMASA---SDYFKAMFTGg 99 ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel ++++ i l + v+ ++ +++f+Yt kl+l+++ n+++ KIAA1354 100 mkeqdlmcIKLHG------VNKVGLKKIIDFIYTaKLSLNMD---NLQDT 140 LelAdfldSYGqip.lvelCeefllknl<-* Le+A+fl qi ++ + C+ fl++ KIAA1354 141 LEAASFL----QILpVLDFCKVFLISGV 164 SM00612: domain 1 of 6, from 314 to 362: score 26.2, E = 0.0045 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg ++ GG + ++ +++k +YD + ++Wr++++M pR+ KIAA1354 314 HLVTLGGVLR------QQLVVSKELRMYDERAQEWRSLAPMDAPRYQ 354 agvaving<-* +g+avi++ KIAA1354 355 HGIAVIGN 362 SM00612: domain 2 of 6, from 363 to 414: score 34.2, E = 1.7e-05 *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs +YvvGG+++ + +++++++v+++Dp+ nkW +v+s++ +R+ KIAA1354 363 FLYVVGGQSN----YDtKGKTAVDTVFRFDPRYNKWMQVASLNEKRT 405 gagvaving<-* + + +++g KIAA1354 406 FFHLSALKG 414 SM00612: domain 3 of 6, from 415 to 461: score 54.4, E = 1.5e-11 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg ++Y+vGG++ + l++vE+Y+p+ n+W+ v++M+ p++g KIAA1354 415 HLYAVGGRSA--------AGELATVECYNPRMNEWSYVAKMSEPHYG 453 agvaving<-* ++ +v +g KIAA1354 454 HAGTVYGG 461 SM00612: domain 4 of 6, from 462 to 508: score 35.3, E = 8.2e-06 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg + Y+ GG + ++ + ++Dp+t+kW + ++M+t R KIAA1354 462 LMYISGGITH--------DTFQNELMCFDPDTDKWMQKAPMTTVRGL 500 agvaving<-* ++++++++ KIAA1354 501 HCMCTVGD 508 SM00612: domain 5 of 6, from 509 to 560: score 37.8, E = 1.5e-06 *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs k+Yv+GG ++ + +++ + + s E+Y+p ++W+p++ M ++ s KIAA1354 509 KLYVIGGNHF----RGtSDYDDVLSCEYYSPTLDQWTPIAAMLRGQS 551 gagvaving<-* +gvav+++ KIAA1354 552 DVGVAVFEN 560 SM00612: domain 6 of 6, from 561 to 609: score 19.4, E = 0.13 *->kiYvvGGfdgttrclpgegqrlksvEv...YDpetnkWrpvpsMptp kiYvvGG++ ++ +vE+ ++YDpe ++W+ v ++p KIAA1354 561 KIYVVGGYS---------WNNRCMVEIvqkYDPEKDEWHKVFDLPES 598 Rsgagvaving<-* g ++++ KIAA1354 599 LGGIRACTLTV 609 //