hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00313428/chunk_1/iprscan-20080502-00313428.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1355 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00047.15.ls Immunoglobulin domain 121.6 2.1e-33 5 PF00047.15.fs Immunoglobulin domain 112.2 1.4e-30 5 PF07679.6.fs Immunoglobulin I-set domain 104.4 7.8e-30 4 PF07679.6.ls Immunoglobulin I-set domain 105.6 1.4e-28 3 PF00041.11.fs Fibronectin type III domain 83.9 1.9e-23 2 PF00041.11.ls Fibronectin type III domain 87.9 2.9e-23 2 PF07686.7.fs Immunoglobulin V-set domain 71.4 1.3e-19 3 PF07686.7.ls Immunoglobulin V-set domain 68.9 1.6e-17 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.ls 1/3 21 141 .. 1 141 [] 22.4 0.00027 PF07686.7.fs 1/3 21 141 .. 17 141 .] 25.6 9.1e-07 PF07686.7.ls 2/3 145 234 .. 1 141 [] 14.0 0.0019 PF07679.6.fs 1/4 146 233 .. 1 96 [] 69.5 1.1e-19 PF07679.6.ls 1/3 146 233 .. 1 96 [] 71.4 2.7e-18 PF00047.15.fs 2/5 161 218 .. 1 65 [] 46.0 7.3e-12 PF00047.15.ls 2/5 161 218 .. 1 65 [] 47.8 3.3e-11 PF07686.7.ls 3/3 236 330 .. 1 141 [] 32.4 1.4e-06 PF07686.7.fs 3/3 236 330 .. 1 141 [] 30.7 3.5e-08 PF07679.6.ls 2/3 237 329 .. 1 96 [] 20.9 2e-05 PF07679.6.fs 2/4 237 312 .. 1 80 [. 20.9 1.7e-05 PF00047.15.fs 3/5 251 313 .. 1 65 [] 20.5 7.3e-05 PF00047.15.ls 3/5 251 313 .. 1 65 [] 22.4 0.0015 PF00047.15.ls 4/5 347 407 .. 1 65 [] 20.0 0.0078 PF00047.15.fs 4/5 347 407 .. 1 65 [] 18.1 0.00032 PF07679.6.ls 3/3 428 513 .. 1 96 [] 13.3 8.5e-05 PF00047.15.ls 5/5 443 498 .. 1 65 [] 23.9 0.00053 PF00047.15.fs 5/5 443 498 .. 1 65 [] 22.1 2.6e-05 PF00041.11.fs 1/2 518 606 .. 1 84 [] 43.7 6.3e-12 PF00041.11.ls 1/2 518 606 .. 1 84 [] 45.7 1.4e-10 PF00041.11.ls 2/2 634 718 .. 1 84 [] 42.1 1.7e-09 PF00041.11.fs 2/2 634 718 .. 1 84 [] 40.1 6.8e-11 Alignments of top-scoring domains: PF07686.7.ls: domain 1 of 3, from 21 to 141: score 22.4, E = 0.00027 *->qsqvtqepprWGLLLASLfWpt..........svtvaeGgsvtLpCt +++++q + +++++++ sv++ G+sv L C KIAA1355 21 SLVISQ---------------GadgrgkpevvSVVGRAGESVVLGCD 52 ysGtfddsssssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvg + ++ ++ ++ ++ i W r + + + + ++ KIAA1355 53 LL-PPAGR-PPLHV--IEWLR-FGFLLPIFIQF-----GLYSP----RID 88 erfkgrvtlsgnpskgdfsLtIsnlqlsDsGtYyCavsns....nelvfg + + grv+ ++ +sL+I l+++D G Y C v++ +++ +e+ f KIAA1355 89 PDYVGRVR-----LQKGASLQIEGLRVEDQGWYECRVFFLdqhiPEDDFA 133 ggtrLtVl<-* +g +++ + KIAA1355 134 NGSWVHLT 141 PF07686.7.fs: domain 1 of 3, from 21 to 141: score 25.6, E = 9.1e-07 *->S.L.fW.p.t.......svtvaeGgsvtLpCtysGtfddsssssgtf S + +++++++++++ sv++ G+sv L C + ++ ++ ++ ++ KIAA1355 21 SlViSQgAdGrgkpevvSVVGRAGESVVLGCDLL-PPAGR-PPLHV- 64 siyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtlsgnpsk i W r + + + + ++ + + grv+ + KIAA1355 65 -IEWLR-FGFLLPIFIQF-----GLYSP----RIDPDYVGRVR-----LQ 98 gdfsLtIsnlqlsDsGtYyCavsns....nelvfgggtrLtVl<-* + +sL+I l+++D G Y C v++ +++ +e+ f +g +++ + KIAA1355 99 KGASLQIEGLRVEDQGWYECRVFFLdqhiPEDDFANGSWVHLT 141 PF07686.7.ls: domain 2 of 3, from 145 to 234: score 14.0, E = 0.0019 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + q +++pp+ ++ v+e + vtL+C + +s KIAA1355 145 PPQFQETPPA------------VLEVQELEPVTLRCVAR----GS-- 173 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls + +++W + + +++ g + + t KIAA1355 174 --PLPHVTWKL-RGK------------------DLGQGQGQVQVQNGT-- 200 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* L+I+ +++ sG+Y+C+ s++ e++ + t+L Vl KIAA1355 201 ---------LRIRRVERGSSGVYTCQASST-EGSATHATQLLVL 234 PF07679.6.fs: domain 1 of 4, from 146 to 233: score 69.5, E = 1.1e-19 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P+F p+ +eVqe e++++ C ++G+P P V+W+ G++l + KIAA1355 146 PQFQETPpAVLEVQELEPVTLRCVARGSPLPHVTWKLRGKDLGQ--- 189 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV ++ + +g tL+I++v+++ sG+YtC+A+ G+a+ +L V KIAA1355 190 -GQGQVQVQNG-----TLRIRRVERGSSGVYTCQASSTEGSATHATQLLV 233 <-* KIAA1355 - - PF07679.6.ls: domain 1 of 3, from 146 to 233: score 71.4, E = 2.7e-18 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P+F p+ +eVqe e++++ C ++G+P P V+W+ G++l + KIAA1355 146 PQFQETPpAVLEVQELEPVTLRCVARGSPLPHVTWKLRGKDLGQ--- 189 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV ++ + +g tL+I++v+++ sG+YtC+A+ G+a+ +L V KIAA1355 190 -GQGQVQVQNG-----TLRIRRVERGSSGVYTCQASSTEGSATHATQLLV 233 <-* KIAA1355 - - PF00047.15.fs: domain 2 of 5, from 161 to 218: score 46.0, E = 7.3e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e+vtL+C + g+p ++vtW+ gk+l++g+ + +++n++ KIAA1355 161 LEPVTLRCVA--RGSPLPHVTWKLRGKdLGqGQGQVQVQNGT----- 200 tsLtitnvtpeDggtYtCvv<-* L+i++v+++ +g+YtC++ KIAA1355 201 --LRIRRVERGSSGVYTCQA 218 PF00047.15.ls: domain 2 of 5, from 161 to 218: score 47.8, E = 3.3e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e+vtL+C + g+p ++vtW+ gk+l++g+ + +++n++ KIAA1355 161 LEPVTLRCVA--RGSPLPHVTWKLRGKdLGqGQGQVQVQNGT----- 200 tsLtitnvtpeDggtYtCvv<-* L+i++v+++ +g+YtC++ KIAA1355 201 --LRIRRVERGSSGVYTCQA 218 PF07686.7.ls: domain 3 of 3, from 236 to 330: score 32.4, E = 1.4e-06 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + ++ pp+ tv+ ++v+L C+ + KIAA1355 236 PPVIVV-PPK------------NSTVNASQDVSLACHAE-----AYP 264 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ +++W++ ++ + ++i +r++ rv++ KIAA1355 265 --ANLTYSWFQ----DNINVFHI-----------------SRLQPRVRIL 291 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* +++s L++ q++D G+Y+C+ sn+ + + LtVl KIAA1355 292 VDGS-----LRLLATQPDDAGCYTCVPSNGLLHPPSASAYLTVL 330 PF07686.7.fs: domain 3 of 3, from 236 to 330: score 30.7, E = 3.5e-08 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + ++ pp+ tv+ ++v+L C+ + KIAA1355 236 PPVIVV-PPK------------NSTVNASQDVSLACHAE-----AYP 264 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ +++W++ ++ + ++i +r++ rv++ KIAA1355 265 --ANLTYSWFQ----DNINVFHI-----------------SRLQPRVRIL 291 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* +++s L++ q++D G+Y+C+ sn+ + + LtVl KIAA1355 292 VDGS-----LRLLATQPDDAGCYTCVPSNGLLHPPSASAYLTVL 330 PF07679.6.ls: domain 2 of 3, from 237 to 329: score 20.9, E = 2e-05 *->PkFtqkpkdveVqeGesarfeCkVtGtPe.PtVsWfKdG......qp P+++ +pk+ +V+ +++++ C+++ +P + t sWf d+ + + + KIAA1355 237 PVIVVPPKNSTVNASQDVSLACHAEAYPAnLTYSWFQDNinvfhiSR 283 lssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeae l++ r+++ +dg +L+ + qpdD+G YtCv +N + KIAA1355 284 LQP------RVRILVDG-----SLRLLATQPDDAGCYTCVPSNGlLHPPS 322 asaeLtV<-* asa LtV KIAA1355 323 ASAYLTV 329 PF07679.6.fs: domain 2 of 4, from 237 to 312: score 20.9, E = 1.7e-05 *->PkFtqkpkdveVqeGesarfeCkVtGtPe.PtVsWfKdG......qp P+++ +pk+ +V+ +++++ C+++ +P + t sWf d+ + + + KIAA1355 237 PVIVVPPKNSTVNASQDVSLACHAEAYPAnLTYSWFQDNinvfhiSR 283 lssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCv<-* l++ r+++ +dg +L+ + qpdD+G YtCv KIAA1355 284 LQP------RVRILVDG-----SLRLLATQPDDAGCYTCV 312 PF00047.15.fs: domain 3 of 5, from 251 to 313: score 20.5, E = 7.3e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty ++v+L C++ +p t++W++++ ++ + + + ++ +d++ KIAA1355 251 SQDVSLACHAE-AYPANLTYSWFQDNInVFhISRLQpRVRILVDGS- 295 qtsLtitnvtpeDggtYtCvv<-* L++++++p+D+g YtCv KIAA1355 296 ---LRLLATQPDDAGCYTCVP 313 PF00047.15.ls: domain 3 of 5, from 251 to 313: score 22.4, E = 0.0015 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty ++v+L C++ +p t++W++++ ++ + + + ++ +d++ KIAA1355 251 SQDVSLACHAE-AYPANLTYSWFQDNInVFhISRLQpRVRILVDGS- 295 qtsLtitnvtpeDggtYtCvv<-* L++++++p+D+g YtCv KIAA1355 296 ---LRLLATQPDDAGCYTCVP 313 PF00047.15.ls: domain 4 of 5, from 347 to 407: score 20.0, E = 0.0078 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G + ++C v+ +pp v+W+++gk l+ + ++s+ +s KIAA1355 347 GMPGVIRCPVR-ANPPLLFVSWTKDGKaLQlDKFPGWSQGTEGS--- 389 tsLtitnvtpeDggtYtCvv<-* L i ++ g+Y+C+ KIAA1355 390 --LIIALGNEDALGEYSCTP 407 PF00047.15.fs: domain 4 of 5, from 347 to 407: score 18.1, E = 0.00032 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G + ++C v+ +pp v+W+++gk l+ + ++s+ +s KIAA1355 347 GMPGVIRCPVR-ANPPLLFVSWTKDGKaLQlDKFPGWSQGTEGS--- 389 tsLtitnvtpeDggtYtCvv<-* L i ++ g+Y+C+ KIAA1355 390 --LIIALGNEDALGEYSCTP 407 PF07679.6.ls: domain 3 of 3, from 428 to 513: score 13.3, E = 8.5e-05 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P F+ +p++ +G + C ++G+P+P VsW+K G+ l+ KIAA1355 428 PAFIERPkEEYFQEVGRELLIPCSAQGDPPPVVSWTKVGRGLQG--- 471 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV ++ +++L+ + +++ G C A+N + ++ +s ++ V KIAA1355 472 ------QAQVD--SNSSLILRPLTKEAHGHWECSASNAVARVATSTNVYV 513 <-* KIAA1355 - - PF00047.15.ls: domain 5 of 5, from 443 to 498: score 23.9, E = 0.00053 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G + ++Cs+ g+p++ v+W++ g +l++ +v+s + KIAA1355 443 GRELLIPCSA--QGDPPPVVSWTKVGRgLQgQAQVDSNSS------- 480 tsLtitnvtpeDggtYtCvv<-* L ++++t+e g + C + KIAA1355 481 --LILRPLTKEAHGHWECSA 498 PF00047.15.fs: domain 5 of 5, from 443 to 498: score 22.1, E = 2.6e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G + ++Cs+ g+p++ v+W++ g +l++ +v+s + KIAA1355 443 GRELLIPCSA--QGDPPPVVSWTKVGRgLQgQAQVDSNSS------- 480 tsLtitnvtpeDggtYtCvv<-* L ++++t+e g + C + KIAA1355 481 --LILRPLTKEAHGHWECSA 498 PF00041.11.fs: domain 1 of 2, from 518 to 606: score 43.7, E = 6.3e-12 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. P +tn++v + + + +sW+p +++g +++++v + ++ ++ KIAA1355 518 PHVVTNVSVVA-LPKGANVSWEPGFDGGYLQRFSV-W-YTPLAKRpd 561 .....wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + +++w++l vp + + + gL+P+t+Y+++V A+n G+Gp+S KIAA1355 562 rmhhdWVSLAVPVGAAHLLVPGLQPHTQYQFSVLAQNKLGsGPFS 606 PF00041.11.ls: domain 1 of 2, from 518 to 606: score 45.7, E = 1.4e-10 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. P +tn++v + + + +sW+p +++g +++++v + ++ ++ KIAA1355 518 PHVVTNVSVVA-LPKGANVSWEPGFDGGYLQRFSV-W-YTPLAKRpd 561 .....wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + +++w++l vp + + + gL+P+t+Y+++V A+n G+Gp+S KIAA1355 562 rmhhdWVSLAVPVGAAHLLVPGLQPHTQYQFSVLAQNKLGsGPFS 606 PF00041.11.ls: domain 2 of 2, from 634 to 718: score 42.1, E = 1.7e-09 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew +s+P++l + t+ + l+W+pP+ ++gY ++ R +++++w KIAA1355 634 LSPPRGLVAVR-TPRGVLLHWDPPElVPKRLDGYVLEGR--QGSQGW 677 kelt..vpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* l++ v gt+t+ + gL ++ Y++r++A g + +S KIAA1355 678 EVLDpaVAGTETELLVPGLIKDVLYEFRLVAFAGSFvSDPS 718 PF00041.11.fs: domain 2 of 2, from 634 to 718: score 40.1, E = 6.8e-11 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew +s+P++l + t+ + l+W+pP+ ++gY ++ R +++++w KIAA1355 634 LSPPRGLVAVR-TPRGVLLHWDPPElVPKRLDGYVLEGR--QGSQGW 677 kelt..vpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* l++ v gt+t+ + gL ++ Y++r++A g + +S KIAA1355 678 EVLDpaVAGTETELLVPGLIKDVLYEFRLVAFAGSFvSDPS 718 //