hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00313428/chunk_1/iprscan-20080502-00313428.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1355 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 173.6 1.9e-47 5 SM00408 138.8 5.9e-37 5 SM00060 72.5 5.1e-17 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/5 36 141 .. 1 58 [] 35.5 7e-06 SM00408 1/5 42 125 .. 1 56 [] 5.1 1.6 SM00409 2/5 153 234 .. 1 58 [] 57.7 1.5e-12 SM00408 2/5 159 223 .. 1 56 [] 63.6 2.6e-14 SM00409 3/5 243 330 .. 1 58 [] 44.0 2e-08 SM00408 3/5 249 318 .. 1 56 [] 21.6 0.031 SM00409 4/5 339 422 .. 1 58 [] 9.0 19 SM00408 4/5 345 412 .. 1 56 [] 5.6 1.4 SM00409 5/5 434 514 .. 1 58 [] 27.4 0.0019 SM00408 5/5 441 503 .. 1 56 [] 42.8 4.6e-08 SM00060 1/2 518 603 .. 1 69 [] 36.1 4.6e-06 SM00060 2/2 634 713 .. 1 69 [] 36.4 3.8e-06 Alignments of top-scoring domains: SM00409: domain 1 of 5, from 36 to 141: score 35.5, E = 7e-06 *->pp.vtvkeGesvtLtC.as.........titWy.............. +v++++Gesv+L C+ ++ + ++ + i W++ + + + + KIAA1355 36 VVsVVGRAGESVVLGCdLLppagrpplhVIEWLrfgfllpifiqfgl 82 ....................LtI.nvtpeDsesgGtYtCaat......sg +++ +++ ++ + +++ +L+I+++++eD+ G Y C++ + + KIAA1355 83 yspridpdyvgrvrlqkgasLQIeGLRVEDQ---GWYECRVFfldqhiPE 129 sasseqgttLtVl<-* ++++ +g +++ + KIAA1355 130 DDFA-NGSWVHLT 141 SM00408: domain 1 of 5, from 42 to 125: score 5.1, E = 1.6 *->leGqsVtLtCpasgdpvp......nItWlk.gkplp........... + G+sV+L C+ p +++++ + I Wl+ g lp + + +++ KIAA1355 42 RAGESVVLGCD--LLPPAgrpplhVIEWLRfGFLLPifiqfglyspr 86 ............sgstLtiknvsleDsGlYtCvArNsvg<-* +++ ++ + ++g +L+i+ ++eD G Y+C++ KIAA1355 87 idpdyvgrvrlqKGASLQIEGLRVEDQGWYECRVFFLDQ 125 SM00409: domain 2 of 5, from 153 to 234: score 57.7, E = 1.5e-12 *->pp.vtvkeGesvtLtC.as.....titWy.................. p ++v+e e+vtL+C a +++ +++tW+ ++++ ++++++ + +++ KIAA1355 153 PAvLEVQELEPVTLRCvARgsplpHVTWKlrgkdlgqgqgqvqvqng 199 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L+I++v++ s G+YtC+a+++ gsa+ t+L Vl KIAA1355 200 tLRIrRVERGSS---GVYTCQASstEGSATH--ATQLLVL 234 SM00408: domain 2 of 5, from 159 to 223: score 63.6, E = 2.6e-14 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn +e ++VtL+C a+g+p p +tW+ +gk l +++++ + ++tL+i++ KIAA1355 159 QELEPVTLRCVARGSPLPHVTWKLrGKDLGqgqgqvqvQNGTLRIRR 205 vsleDsGlYtCvArNsvg<-* v+++ sG+YtC+A++ g KIAA1355 206 VERGSSGVYTCQASSTEG 223 SM00409: domain 3 of 5, from 243 to 330: score 44.0, E = 2e-08 *->pp.vtvkeGesvtLtC.as......titWy................. p++ tv++ ++v+L C+a+ + + t++W++++ + + ++ +++ + KIAA1355 243 PKnSTVNASQDVSLAChAEaypanlTYSWFqdninvfhisrlqprvr 289 ......LtI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<-* +++L++ +p+D+ G YtC+ +++ + s+ +++LtVl KIAA1355 290 ilvdgsLRLlATQPDDA---GCYTCVPSnglLHPPSA--SAYLTVL 330 SM00408: domain 3 of 5, from 249 to 318: score 21.6, E = 0.031 *->leGqsVtLtCpasgdpvp.nItWlk.gkplp............sgst + q+V+L C+a+++p+ + +W+ ++ + + ++ +++ + +++ KIAA1355 249 NASQDVSLACHAEAYPANlTYSWFQdNINVFhisrlqprvrilVDGS 295 LtiknvsleDsGlYtCvArNsvg<-* L++ +++D+G YtCv +N KIAA1355 296 LRLLATQPDDAGCYTCVPSNGLL 318 SM00409: domain 4 of 5, from 339 to 422: score 9.0, E = 19 *->pp.vtvkeGesvtLtC.as......titWy................. pp++ G + +++C++ +++ ++W+++++ + ++ ++ +++ KIAA1355 339 PPeTPLPIGMPGVIRCpVRanppllFVSWTkdgkalqldkfpgwsqg 385 ....LtInvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-* + ++L+I + eD+ G+Y C+ +s + + + +t KIAA1355 386 tegsLIIALGNEDA--LGEYSCTPYnSLGTAG--PSPVTRV 422 SM00408: domain 4 of 5, from 345 to 412: score 5.6, E = 1.4 *->leGqsVtLtCpasgdpvpn.ItWlk.gkplp..........sgstLt +G + +++Cp++++p ++W+k+gk l+ ++ ++ +++++++L KIAA1355 345 PIGMPGVIRCPVRANPPLLfVSWTKdGKALQldkfpgwsqgTEGSL- 390 iknvsleDs.GlYtCvArNsvg<-* i eD+ G+Y+C+ Ns g KIAA1355 391 IIALGNEDAlGEYSCTPYNSLG 412 SM00409: domain 5 of 5, from 434 to 514: score 27.4, E = 0.0019 *->pp.vtvke.GesvtLtC.as.....titWy................. p++ + +e G + ++C+a++++++ ++W++ +++ +++ + +++++ KIAA1355 434 PKeEYFQEvGRELLIPCsAQgdpppVVSWTkvgrglqgqaqvdsnss 480 LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-* L+++++t+e G C a+++ + +t+++Vl KIAA1355 481 LILrPLTKEAH---GHWECSASnAVARVA-TSTNVYVL 514 SM00408: domain 5 of 5, from 441 to 503: score 42.8, E = 4.6e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp......sgstLtiknvs + G+ + ++C a gdp p ++W+k g l+++ + +s+s+L +++ + KIAA1355 441 EVGRELLIPCSAQGDPPPVVSWTKvGRGLQgqaqvdSNSSLILRPLT 487 leDsGlYtCvArNsvg<-* +e G+ +C+A+N+v KIAA1355 488 KEAHGHWECSASNAVA 503 SM00060: domain 1 of 2, from 518 to 603: score 36.1, E = 4.6e-06 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr.... P ++n ++v++ + +++sWep ++++ +++++ + KIAA1355 518 PHVVTN---VSVVALPKG-------ANVSWEPGfdggyLQRFSvwyt 554 ........................ytltgLkPgaepwteYefrVrAvngn + +++++ ++++ ++++ ++gL+P+ t+Y+f+V A n+ KIAA1355 555 plakrpdrmhhdwvslavpvgaahLLVPGLQPH----TQYQFSVLAQNK- 599 daGeg<-* G+g KIAA1355 600 -LGSG 603 SM00060: domain 2 of 2, from 634 to 713: score 36.4, E = 3.8e-06 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... +pP++ l+++ t++ v l+W+pP+ ++ gY+ ++ KIAA1355 634 LSPPRG---LVAV-RTPR------GVLLHWDPPelvpkrLDGYVleg 670 ....................ytltgLkPgaepwteYefrVrAvngndaGe +++++++++ ++ + +++++ ++gL + Yefr++A+ aG+ KIAA1355 671 rqgsqgwevldpavagteteLLVPGLIKD----VLYEFRLVAF----AGS 712 g<-* KIAA1355 713 F 713 //