# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj01605.fasta.huge -Q ../query/KIAA1356.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1356, 519 aa vs ./tmplib.24314 library 1986986 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.4794+/-0.00519; mu= 17.1698+/- 0.354 mean_var=94.7819+/-21.882, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.131738 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1120 ( 1024 res) hg02941 (1024) 518 109.1 1.5e-24 KIAA1123 ( 1717 res) fh01458 (1717) 516 109.1 2.7e-24 KIAA1169 ( 857 res) hh10053 ( 857) 234 55.1 2.4e-08 KIAA1144 ( 489 res) hj05565 ( 489) 146 38.0 0.0019 >>KIAA1120 ( 1024 res) hg02941 (1024 aa) initn: 356 init1: 194 opt: 518 Z-score: 532.5 bits: 109.1 E(): 1.5e-24 Smith-Waterman score: 518; 31.902% identity (65.951% similar) in 326 aa overlap (7-321:251-561) 10 20 30 KIAA13 DIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANKFQG :.:. :: .: :. .: :. . KIAA11 FFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKK--RRKAQR-LPYYATYCHT 230 240 250 260 270 40 50 60 70 80 90 KIAA13 --MVFDFVTRQVFDISIMILICLNMVTMMVETDDQGKYMTLVLSRINLVFIVLFTGEFVL .. .. : . .:: : ..::::.::: .: .: . .:. : .: ..:. : :: KIAA11 RLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVL 280 290 300 310 320 330 100 110 120 130 140 150 KIAA13 KLVS--LRHYYFTIGWNIFDFVVVILSIVGMFLAEM-IEKYF-VSPTLFRVIRLARIGRI :::. ::.. : :: .:...:.::..:. : :. :. . ..::..:..:. ::.:. KIAA11 KLVAFGLRRF-FKDRWNQLDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARV 340 350 360 370 380 390 160 170 180 190 200 KIAA13 LRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYV-----KKEAGI :.:.: : :.:.:: .....:: . :.:::..:..:::: .:. :. . . :. KIAA11 LKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLVCNDENPCEGM 400 410 420 430 440 450 210 220 230 240 250 260 KIAA13 DDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPDTIHPGSSVKGDCGNPSV . .::.:: ... :::..:. .:.:.. : :: : ::.. : KIAA11 SRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLR----DCTHDERSCLSSLQ------FV 460 470 480 490 500 270 280 290 300 310 320 KIAA13 GIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQ . ..:::... . .:..:. .::...... ...:. : .: : :. :. . . : KIAA11 SPLYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQED-AEMDAELELEMAHGLGPGPRL 510 520 530 540 550 560 330 340 350 360 370 380 KIAA13 FIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGE KIAA11 PTGSPGAPGRGPGGAGGGGDTEGGLCRRCYSPAQENLWLDSVSLIIKDSLEGELTIIDNL 570 580 590 600 610 620 >>KIAA1123 ( 1717 res) fh01458 (1717 aa) initn: 485 init1: 186 opt: 516 Z-score: 528.1 bits: 109.1 E(): 2.7e-24 Smith-Waterman score: 516; 30.631% identity (64.565% similar) in 333 aa overlap (7-327:1007-1324) 10 20 30 KIAA13 DIFMTEEQKKYYNAMKKLGSKKPQ-KPIPRPANKFQ :.:. :: .: : :: ..:. KIAA11 FFVLNMFVGVVVENFHKCRQHQEEEEARRREEKRLRRLEKK--RRKAQCKPYYSDYSRFR 980 990 1000 1010 1020 1030 40 50 60 70 80 90 KIAA13 GMVFDFVTRQVFDISIMILICLNMVTMMVETDDQGKYMTLVLSRINLVFIVLFTGEFVLK .: . : . .:. : .: ::.::: .: .: . . .:. : .: :.:. : :.: KIAA11 LLVHHLCTSHYLDLFITGVIGLNVVTMAMEHYQQPQILDEALKICNYIFTVIFVLESVFK 1040 1050 1060 1070 1080 1090 100 110 120 130 140 150 KIAA13 LVSLR-HYYFTIGWNIFDFVVVILSIVGMFLAEM-IEKYF-VSPTLFRVIRLARIGRILR ::.. . .: :: .:...:.:::.:. : :. .. . ..::..:..:. ::.:.:. KIAA11 LVAFGFRRFFQDRWNQLDLAIVLLSIMGITLEEIEVNASLPINPTIIRIMRVLRIARVLK 1100 1110 1120 1130 1140 1150 160 170 180 190 200 KIAA13 LIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEA-----GIDD :.: : :.:.:: ..:..:: . :.:::..:..::.: .:. :. .. . :. KIAA11 LLKMAVGMRALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELFGDLECDETHPCEGLGR 1160 1170 1180 1190 1200 1210 210 220 230 240 250 260 KIAA13 MFNFETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPDTIHPGSSVKGDCGNPSVGI .:..:: ... ::...:. .:.:.. : ::: .. : : .. KIAA11 HATFRNFGMAFLTLFRVSTGDNWNGIMKDTLR----DCDQEST---------CYNTVISP 1220 1230 1240 1250 1260 270 280 290 300 310 320 KIAA13 FFFVSYIIISFLVVVNMYIAVILENFSVATEES---AEPLSEDDFEMFYEVWEKFDPDAT ..:::... . .:.::. :::..... ...:. :: .: ..:: . .: .. KIAA11 IYFVSFVLTAQFVLVNVVIAVLMKHLEESNKEAKEEAELEAELELEMKTLSPQPHSPLGS 1270 1280 1290 1300 1310 1320 330 340 350 360 370 380 KIAA13 QFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESG :. KIAA11 PFLWPGVEGPDSPDSPKPGALHPAAHARSASHFSLEHPTMQPHPTELPGPDLLTVRKSGV 1330 1340 1350 1360 1370 1380 >>KIAA1169 ( 857 res) hh10053 (857 aa) initn: 150 init1: 102 opt: 234 Z-score: 241.6 bits: 55.1 E(): 2.4e-08 Smith-Waterman score: 234; 25.267% identity (58.363% similar) in 281 aa overlap (27-293:464-731) 10 20 30 40 50 KIAA13 DIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANK-FQGMVFDFVTRQVFDISIMILI .:: : :.:. . .: ..:. ..... KIAA11 LLSLKDFYDIYEVAALKWKAKKNREHWFDELPRTALLIFKGINI-LVKSKAFQYFMYLVV 440 450 460 470 480 490 60 70 80 90 100 110 KIAA13 CLNMVTMMVET--DDQGKYMTLVLSRINLVFIVLFTGEFVLKLVSLRHY-YFTIGWNIFD .: : ..::: :.... . :::.... :. ::...: :.. :::.:: KIAA11 AVNGVWILVETFMLKGGNFFSKHVPWSYLVFLTIYGVELFLKVAGLGPVEYLSSGWNLFD 500 510 520 530 540 550 120 130 140 150 160 170 KIAA13 FVVVILSIVGMF-LAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSL : :......:.. :: .: .. : :. : ..:::.: . :..: ... : KIAA11 FSVTVFAFLGLLALALNMEPFY-----FIVV--LRPLQLLRLFKLKERYRNVLDTMFELL 560 570 580 590 600 180 190 200 210 220 KIAA13 PALFNIGLLLFLVMFIYAIFGMSNFAYVK-----KEAGIDDMFNFE--TFGNSMICLFQI : . ..:: :.. .. .:: :: : . . . . : . .. : :: . KIAA11 PRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGY 610 620 630 640 650 660 230 240 250 260 270 280 KIAA13 TTSAGWDGLLAPILNSAPPDCDPDTIHPGSSV-KGDCGNPS-VGIFFFVSYIIISFLVVV ..:. :::: . ... . .: .. : . ..:... :.. .::. KIAA11 YYLNNFDN----ILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVT-MVVM 670 680 690 700 710 720 290 300 310 320 330 340 KIAA13 NMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEFSKLSDFAAALDPP .. .: ::: : KIAA11 TIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEISKEELVAVLELYREARGASSDVTR 730 740 750 760 770 780 >>KIAA1144 ( 489 res) hj05565 (489 aa) initn: 180 init1: 68 opt: 146 Z-score: 153.8 bits: 38.0 E(): 0.0019 Smith-Waterman score: 148; 26.291% identity (53.991% similar) in 213 aa overlap (6-202:161-366) 10 20 KIAA13 DIFMTEEQKKYYNAMKK-----LGSKKPQK--PIP .: .:: .: ::. . : . KIAA11 CSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGNFRRQLWLALD 140 150 160 170 180 190 30 40 50 60 70 80 KIAA13 RPANKFQGMVFDFVTRQVFDISIMILICLNMVTMMVETDDQGKYMTLVLSRINLVF-IVL :. . . ::.... : :: : .::: . . :.::. .: : :. KIAA11 NPGYSVLSRVFSILSILVVMGSI-ITMCLNSLPDFQIPDSQGNPGEDPRFEIVEHFGIAW 200 210 220 230 240 90 100 110 120 130 KIAA13 FTGEFVLKLVSLRHY--YFTIGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLF------ :: :.: ... . .: . :..:.. .. . . . ..:. .::: KIAA11 FTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLVVES---TPTLANLGRVA 250 260 270 280 290 300 140 150 160 170 180 190 KIAA13 RVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYV .:.:: :: :::.: . . :.:.: .: .: ..::::. . .::.. .. KIAA11 QVLRLMRIFRILKLARHSTGLRSLGATLKYSYK---EVGLLLLYLSVGISIFSVVAYTIE 310 320 330 340 350 360 200 210 220 230 240 250 KIAA13 KKEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPDTIHPGSSVKGD :.: KIAA11 KEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITLIFN 370 380 390 400 410 420 519 residues in 1 query sequences 1986986 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:19:03 2008 done: Thu Dec 18 15:19:04 2008 Total Scan time: 0.450 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]