# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj02029.fasta.huge -Q ../query/KIAA1358.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1358, 1123 aa vs ./tmplib.24314 library 1986382 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.2243+/-0.00592; mu= 17.5522+/- 0.402 mean_var=128.4271+/-30.096, 0's: 0 Z-trim: 3 B-trim: 4 in 1/39 Lambda= 0.113174 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0297 ( 1271 res) hf00325 (1271) 242 51.8 7.3e-07 KIAA0329 ( 1417 res) hg00872 (1417) 242 51.9 7.8e-07 KIAA1539 ( 543 res) fg02356 ( 543) 184 41.9 0.00031 >>KIAA0297 ( 1271 res) hf00325 (1271 aa) initn: 247 init1: 113 opt: 242 Z-score: 215.1 bits: 51.8 E(): 7.3e-07 Smith-Waterman score: 270; 30.055% identity (57.377% similar) in 183 aa overlap (168-339:1040-1218) 140 150 160 170 180 190 KIAA13 SKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSSWSLL ..::.. :.:. : .:.: : : :. : KIAA02 SVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQVFIRT-LSKSCPTGMHWTRL 1010 1020 1030 1040 1050 1060 200 210 220 230 240 250 KIAA13 DTP--GEV--VQISCGPHDLLWATLWEGQALVREGINRSNPKG--SSWSIVEPPGSENGV : : : ....:: .. .:: .: . : : . ::. .: ..::: . :: KIAA02 DLSQLGAVKLTSLACG-NQHIWACDSRGGVYFRVGTQPLNPSLMLPAWIMIEPPVQPAGV 1070 1080 1090 1100 1110 1120 260 270 280 290 300 KIAA13 MHISVGVS----VVWAVTKDWKVWFRRGVNSHNPCGTSWIEMVGEMTMVNVGMNDQ-VWG .:: : ..:.. . :.: : :.. . : ::.: : : . ..... . ::. KIAA02 SLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAW-EHVPGLQACQLALSTRTVWA 1130 1140 1150 1160 1170 1180 310 320 330 340 350 360 KIAA13 IGCEDRAVYFRQGVTPSELSGKTWKAIIAARECDRSHSGSSSSLLSAGCFFGDEVRGSGE : . . : ::: .. .: :: : .. : KIAA02 -RCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAVGPPGYLLQRLTKTFS 1190 1200 1210 1220 1230 1240 370 380 390 400 410 420 KIAA13 SAPSDTDASSEVERPGPGQILPAEPLDDSKNATGNSASGLGAGRTAEDTVEDACPAEGSR KIAA02 HSHGTQKSSQAAMPHPEDLEDEWEVI 1250 1260 1270 >>KIAA0329 ( 1417 res) hg00872 (1417 aa) initn: 247 init1: 113 opt: 242 Z-score: 214.6 bits: 51.9 E(): 7.8e-07 Smith-Waterman score: 270; 30.055% identity (57.377% similar) in 183 aa overlap (168-339:1186-1364) 140 150 160 170 180 190 KIAA13 SKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSSWSLL ..::.. :.:. : .:.: : : :. : KIAA03 SVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQVFIRT-LSKSCPTGMHWTRL 1160 1170 1180 1190 1200 1210 200 210 220 230 240 250 KIAA13 DTP--GEV--VQISCGPHDLLWATLWEGQALVREGINRSNPKG--SSWSIVEPPGSENGV : : : ....:: .. .:: .: . : : . ::. .: ..::: . :: KIAA03 DLSQLGAVKLTSLACG-NQHIWACDSRGGVYFRVGTQPLNPSLMLPAWIMIEPPVQPAGV 1220 1230 1240 1250 1260 1270 260 270 280 290 300 KIAA13 MHISVGVS----VVWAVTKDWKVWFRRGVNSHNPCGTSWIEMVGEMTMVNVGMNDQ-VWG .:: : ..:.. . :.: : :.. . : ::.: : : . ..... . ::. KIAA03 SLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAW-EHVPGLQACQLALSTRTVWA 1280 1290 1300 1310 1320 1330 310 320 330 340 350 360 KIAA13 IGCEDRAVYFRQGVTPSELSGKTWKAIIAARECDRSHSGSSSSLLSAGCFFGDEVRGSGE : . . : ::: .. .: :: : .. : KIAA03 -RCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAVGPPGYLLQRLTKTFS 1340 1350 1360 1370 1380 1390 370 380 390 400 410 420 KIAA13 SAPSDTDASSEVERPGPGQILPAEPLDDSKNATGNSASGLGAGRTAEDTVEDACPAEGSR KIAA03 HSHGTQKSSQAAMPHPEDLEDEWEVI 1400 1410 >>KIAA1539 ( 543 res) fg02356 (543 aa) initn: 114 init1: 57 opt: 184 Z-score: 167.8 bits: 41.9 E(): 0.00031 Smith-Waterman score: 184; 23.510% identity (47.682% similar) in 302 aa overlap (802-1092:7-294) 780 790 800 810 820 830 KIAA13 TQSDVKCVHIYENQRWNPVTGYTSRGLPTDRYMWSDASGLQECTKAGTKPPSLQWAWVSD :.. .. : .: . ..:: : : . KIAA15 PKGGFMRHVQAEPSPSSEPEAGPSQPPVRQGALQGG 10 20 30 840 850 860 870 880 KIAA13 WFVDFSVPGGTDQEGWQYASDFPASYHGSKTMKDFVRRRCWARKCKLVTSGPWLE----V .. .: ::. . : .: : :. . . :. .. . . :: : . KIAA15 LLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGL 40 50 60 70 80 90 890 900 910 920 930 940 KIAA13 PPIALRDVSII-PESPGAEGSGHSIALWAVSDKGDVLCRLGVSELNPAGSSWLHVGTDQP :: :... ::.:: : ..: : .: :: : . . . ::: :. .: KIAA15 PPEEPSTVGLLGPEGPGL---GLGVASQHFSHRG--LCV--VEQRSSVTSSWTS-GAWSP 100 110 120 130 140 950 960 970 980 990 1000 KIAA13 FASISIGACYQV----WAVARDGSAFYRGSVYPSQ-PAGDCWYHIPSPPRQRLKQVSAGQ : ..: . :: :. .::. : :: : . . : :.. :. KIAA15 PCPPSNASCNTLHTRDWASPDPGG---QGSLGESPGPAPPGQLHTLDTDLHSLAQIG-GK 150 160 170 180 190 200 1010 1020 1030 1040 1050 1060 KIAA13 TSVYALDENGNLWYRQGITPSYPQGSSWEHVSNNVCRVSVGPLDQVWVIANKVQGSHSLS . : .. ..:.:: :. .:. .: : ::. . . : . . :... : KIAA15 SPVAGVGNGGSLWPRE--SPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEE 210 220 230 240 250 260 1070 1080 1090 1100 1110 1120 KIAA13 RGTVCHRT-GVQPHEPKGHGWDYGIGGGWDHISVRANATRAPRSSSQEQEPSAPPEAHGP .: . .: : : ... : :.:. KIAA15 EGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLK 270 280 290 300 310 320 KIAA13 VCC KIAA15 LSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGAS 330 340 350 360 370 380 1123 residues in 1 query sequences 1986382 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:19:08 2008 done: Thu Dec 18 15:19:09 2008 Total Scan time: 0.700 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]