hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00430998/chunk_1/iprscan-20080502-00430998.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1362 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00621.11.fs RhoGEF domain 124.7 1.1e-36 1 PF00621.11.ls RhoGEF domain 126.5 6.7e-35 1 PF01363.12.ls FYVE zinc finger 113.6 5.2e-31 1 PF01363.12.fs FYVE zinc finger 111.8 1.8e-30 1 PF00169.19.fs PH domain 81.7 2.1e-24 2 PF00169.19.ls PH domain 66.0 1.1e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00621.11.fs 1/1 207 391 .. 1 207 [] 124.7 1.1e-36 PF00621.11.ls 1/1 207 391 .. 1 207 [] 126.5 6.7e-35 PF00169.19.ls 1/1 422 515 .. 1 92 [] 66.0 1.1e-16 PF00169.19.fs 1/2 422 515 .. 1 92 [] 64.0 4.9e-19 PF01363.12.fs 1/1 549 614 .. 1 77 [] 111.8 1.8e-30 PF01363.12.ls 1/1 549 614 .. 1 77 [] 113.6 5.2e-31 Alignments of top-scoring domains: PF00621.11.fs: domain 1 of 1, from 207 to 391: score 124.7, E = 1.1e-36 *->vlkElleTEkkYvrdLeildnvymkpLreaaiss.kplLtpddieti ++kE++ +Ek++v+ L +l +++ + a++ +kp++ + ++ i KIAA1362 207 IAKEIMSSEKVFVDVLKLLHIDFRDAVAHASRQLgKPVIEDRILNQI 253 FsNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel ++ +ye++r++Lk +Le+r+ + ++qr++d+F + KIAA1362 254 LYYLPQLYELNRDLLK-ELEERMLHW-----------TEQQRIADIFVKK 291 kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAk + l++Y Y++ ++ + ll+ q+++np Fa ++ e e s+ + KIAA1362 292 -GPYLKMYSTYIKEFDKNIALLDE--QCKKNPGFAAVVREFEMSPCCA-- 336 ddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkald +l L ++LlkPvqRi+ Y LLL ++Lk + e d ++ d ++al+ KIAA1362 337 ----NLALKHYLLKPVQRIPQYRLLLTDYLKNLIE--DAGDYRDTQDALA 380 alqdlaksiNe<-* + ++a++ N+ KIAA1362 381 VVIEVANHAND 391 PF00621.11.ls: domain 1 of 1, from 207 to 391: score 126.5, E = 6.7e-35 *->vlkElleTEkkYvrdLeildnvymkpLreaaiss.kplLtpddieti ++kE++ +Ek++v+ L +l +++ + a++ +kp++ + ++ i KIAA1362 207 IAKEIMSSEKVFVDVLKLLHIDFRDAVAHASRQLgKPVIEDRILNQI 253 FsNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel ++ +ye++r++Lk +Le+r+ + ++qr++d+F + KIAA1362 254 LYYLPQLYELNRDLLK-ELEERMLHW-----------TEQQRIADIFVKK 291 kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAk + l++Y Y++ ++ + ll+ q+++np Fa ++ e e s+ + KIAA1362 292 -GPYLKMYSTYIKEFDKNIALLDE--QCKKNPGFAAVVREFEMSPCCA-- 336 ddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkald +l L ++LlkPvqRi+ Y LLL ++Lk + e d ++ d ++al+ KIAA1362 337 ----NLALKHYLLKPVQRIPQYRLLLTDYLKNLIE--DAGDYRDTQDALA 380 alqdlaksiNe<-* + ++a++ N+ KIAA1362 381 VVIEVANHAND 391 PF00169.19.ls: domain 1 of 1, from 422 to 515: score 66.0, E = 1.1e-16 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk...kkpkgsipL keG L+k + +k ++R f+Lf+d Lly + +++ +k+ +++L KIAA1362 422 FLKEGILMKLS-RKVMQPRMFFLFNDALLYTTPVQsgmYKLNNMLSL 467 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< g++v+k++ +n ++i + +r +++l+a+s+ er eW++ai++ai KIAA1362 468 AGMKVRKPTQEAYQNELKIESvER-SFILSASSATERDEWLEAISRAIE 515 -* KIAA1362 - - PF00169.19.fs: domain 1 of 2, from 422 to 515: score 64.0, E = 4.9e-19 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk...kkpkgsipL keG L+k + +k ++R f+Lf+d Lly + +++ +k+ +++L KIAA1362 422 FLKEGILMKLS-RKVMQPRMFFLFNDALLYTTPVQsgmYKLNNMLSL 467 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< g++v+k++ +n ++i + +r +++l+a+s+ er eW++ai++ai KIAA1362 468 AGMKVRKPTQEAYQNELKIESvER-SFILSASSATERDEWLEAISRAIE 515 -* KIAA1362 - - PF01363.12.fs: domain 1 of 1, from 549 to 614: score 111.8, E = 1.8e-30 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll p W+pD +++Cm+C +Ft lt RrHHCRaCG+i+C+ Css++ l KIAA1362 549 PIWIPDTRATMCMICTSEFT-LTWRRHHCRACGKIVCQACSSNKYGL 594 pylgiaallkndviekpvRVCdsCydrlnk<-* +yl +++p+RVC++C++ l+k KIAA1362 595 DYL----------KNQPARVCEHCFQELQK 614 PF01363.12.ls: domain 1 of 1, from 549 to 614: score 113.6, E = 5.2e-31 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll p W+pD +++Cm+C +Ft lt RrHHCRaCG+i+C+ Css++ l KIAA1362 549 PIWIPDTRATMCMICTSEFT-LTWRRHHCRACGKIVCQACSSNKYGL 594 pylgiaallkndviekpvRVCdsCydrlnk<-* +yl +++p+RVC++C++ l+k KIAA1362 595 DYL----------KNQPARVCEHCFQELQK 614 //