hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00430998/chunk_1/iprscan-20080502-00430998.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1362 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00325 163.6 2e-44 1 SM00064 112.2 5.7e-29 1 SM00233 66.6 3.2e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00325 1/1 207 391 .. 1 211 [] 163.6 2e-44 SM00233 1/1 422 517 .. 1 82 [] 66.6 3.2e-15 SM00064 1/1 546 614 .. 1 81 [] 112.2 5.7e-29 Alignments of top-scoring domains: SM00325: domain 1 of 1, from 207 to 391: score 163.6, E = 2e-44 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl ++kE++ +E+ +V+ Lk+l f+ + +++ ++p++ ++ ++++ KIAA1362 207 IAKEIMSSEKVFVDVLKLLHIDFRDAVAHASRQLGKPVIEDRILNQI 253 FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv + ++ +ye++r++L+eLeer+ w ++ri+d+ KIAA1362 254 LY-YLPQLYELNRDLLKELEERMLHW---------------TEQQRIADI 287 FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk F+k +++k+Ys+Y++ +++ ++ll++ ++kknp F+++++e+e + KIAA1362 288 FVKK---GPYLKMYSTYIKEFDKNIALLDE--QCKKNPGFAAVVREFEMS 332 pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk p c +l L+++L+kPvQR+++Y LLL ++lk+ +d d+ d ++ KIAA1362 333 PCCA-----NLALKHYLLKPVQRIPQYRLLLTDYLKNLIEDAGDYRDTQD 377 AleaikelasqvNe<-* Al+++ e+a++ N+ KIAA1362 378 ALAVVIEVANHAND 391 SM00233: domain 1 of 1, from 422 to 517: score 66.6, E = 3.2e-15 *->vikeGwLlkksk.swkkryfvLfngvLlyyksk.....kpkgsipLs ++keG L+k+s++ ++r f+Lfn+ Lly+ + +++ k+ +++L KIAA1362 422 FLKEGILMKLSRkVMQPRMFFLFNDALLYTTPVqsgmyKLNNMLSLA 468 gcsvre.p......cFeivt.drtlllqAeseeereeWvealqsaiaka< g++vr+++ + + ++i + +r+++l+A+s+ er+eW+ea+ +ai+++ KIAA1362 469 GMKVRKpTqeayqnELKIESvERSFILSASSATERDEWLEAISRAIEEY 517 -* KIAA1362 - - SM00064: domain 1 of 1, from 546 to 614: score 112.2, E = 5.7e-29 *->etaphWvpDeeasnClmnCgkeFtlvtrRrHHCRnCGrifCskCssk +ap W+pD +a +C m C eFtl t RrHHCR+CG+i+C+ Css+ KIAA1362 546 SKAPIWIPDTRATMC-MICTSEFTL-TWRRHHCRACGKIVCQACSSN 590 kaplpklgkekkngknedftpvRVCdsCyerlsk<-* k l++l++ p+RVC +C+++l+k KIAA1362 591 KYGLDYLKNQ----------PARVCEHCFQELQK 614 //