# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj02517.fasta.huge -Q ../query/KIAA1365.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1365, 831 aa vs ./tmplib.24314 library 1986674 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.9248+/-0.00628; mu= 1.8730+/- 0.424 mean_var=216.1614+/-51.666, 0's: 0 Z-trim: 7 B-trim: 7 in 1/39 Lambda= 0.087234 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1225 ( 1371 res) fh04221s1 (1371) 457 71.0 9.6e-13 KIAA0147 ( 1630 res) ha01022s1 (1630) 197 38.4 0.0077 >>KIAA1225 ( 1371 res) fh04221s1 (1371 aa) initn: 707 init1: 453 opt: 457 Z-score: 320.6 bits: 71.0 E(): 9.6e-13 Smith-Waterman score: 833; 32.293% identity (59.438% similar) in 641 aa overlap (214-830:802-1370) 190 200 210 220 230 240 KIAA13 QNWTRTPSPFEDRTAFPSKLETTPTTSPLPERKEHIKESTEIPSPFSPGVPWEYHDSNPN :. ::...... :. : . . . . . KIAA12 TNDTFQPEIMERSKTQDIVLGTSFLSINSKEETEHLENGNKYPNLESVN---KVNGHSEE 780 790 800 810 820 250 260 270 280 290 300 KIAA13 RSLSNVFSQIHCRPESSKGV-ISISKSTERLSPLMKDIKSNKFKKSQSIDEIDIGTYKVY : : .. : .:. .: ..:::::: ::: .:. .. ::.:: ...:: :.: KIAA12 TSQSPNRTEPH---DSDCSVDLGISKSTEDLSP-QKSGPVGSVVKSHSITNMEIGGLKIY 830 840 850 860 870 880 310 320 330 340 350 360 KIAA13 NIPLENYASGSDHLGSHERPDKMLGPEHGMSSMSRSQSVPMLDDEMLTYGSSKGPQQQKA .: .: : .. .. :. . : ... ::.:. .: :. : .... ... KIAA12 DILSDN---GPQQPSTTV---KITSAVDG-KNIVRSKSATLLYDQPLQVFTGSSSSSDLI 890 900 910 920 930 370 380 390 400 410 KIAA13 SMTKKVYQFDQSFNPQGSVEVKAEKRIP---PPFQHNPEY-VQQASKNIAKDLI-----S : :: ...::.. ::. ... : : . :.: .: .:. .:: . . KIAA12 SGTKAIFKFDSNHNPEEPNIIRGPTSGPQSAPQIYGPPQYNIQYSSSAAVKDTLWHSKQN 940 950 960 970 980 990 420 430 440 450 460 470 KIAA13 PRA-YRGYPPMEQMFSFSQPSVNEDAVVNAQFASQGARAGFLRRADSLVSATEMAMFRRV :. . ..:: :.. :. . :.. .:...: .: ... . : . . .:. KIAA12 PQIDHASFPP--QLLPRSESTENQS------YAKHSANMNF-SNHNNVRANTAYHLHQRL 1000 1010 1020 1030 1040 480 490 500 510 520 KIAA13 N-----EPHELPPTDRYGRPPYRGGLDRQSSVTVTESQFL------KRNGRYEDEHPSYQ . : . :.:: :. ..:::::. : : : .: : .. ::. KIAA12 GPARHGEMWAISPNDRLIPAVTRSTIQRQSSVSSTASVNLGDPGSTRRAQIPEGDYLSYR 1050 1060 1070 1080 1090 1100 530 540 550 560 570 KIAA13 EVKAQAGSFPVKNLTQRRPLSARSYSTESYGASQTRPVSARPTMAALLEKIPS--DYNLG : .. :: : ..::::::.:: . : . .:: ::::.. . :. : :.: . KIAA12 EFHS-AGRTPPMMPGSQRPLSARTYSID--GPNASRPQSARPSINEIPERTMSVSDFNYS 1110 1120 1130 1140 1150 1160 580 590 600 610 620 630 KIAA13 NYGDKPSDNSDLKTRPTPVKGEESCGKMPADWRQQLLRHIEARRLDRTPSQQSNILDNGQ . . :. . .. . . . .:.: :::.:.::::::..:.. : :.::: KIAA12 RTSPSKRPNARVGSEHS-LLDPPGKSKVPRDWREQVLRHIEAKKLEKMP------LSNGQ 1170 1180 1190 1200 1210 640 650 660 670 680 690 KIAA13 EDVSPSGQWNPYPLGRRDVPPDTITKKAGSHIQTLMGSQSLQHRSREQQPYEGNINKVTI :: :: : : . :.:. .. .: :::: :. . . KIAA12 M-----GQ----PL-R----P----QANYSQIHHPPQASVARHPSREQL-----IDYLML 1220 1230 1240 1250 700 710 720 730 740 750 KIAA13 QQFQSPLPIQIPSSQATRGPQPGRCLIQTKGQRSMDGYPEQFCVRIEKNPGLGFSISGGI . ..: : .: .:. :. : . ... ::.::.: ::::::::. KIAA12 KVAHQP-----PYTQPHCSPRQGHELAK-----------QEIRVRVEKDPELGFSISGGV 1260 1270 1280 1290 760 770 780 790 800 810 KIAA13 SGQGNPFKPSDKGIFVTRVQPDGPASNLLQPGDKILQANGHSFVHMEHEKAVLLLKSFQN .:.::::.:.: :::::::::.::::.::::::::.::::.::...:: .:: :::.::: KIAA12 GGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQN 1300 1310 1320 1330 1340 1350 820 830 KIAA13 TVDLVIQRELTV ::.:.: ::.. KIAA12 TVELIIVREVSS 1360 1370 >>KIAA0147 ( 1630 res) ha01022s1 (1630 aa) initn: 225 init1: 113 opt: 197 Z-score: 142.9 bits: 38.4 E(): 0.0077 Smith-Waterman score: 245; 24.590% identity (55.464% similar) in 366 aa overlap (492-831:469-817) 470 480 490 500 510 KIAA13 SATEMAMFRRVNEPHELPPTDRYGRPPYRGGLDRQSSVTVTESQFLKRN--GRYEDEHPS ::.:... .: . .::. :: . : KIAA01 DAPPSRVSVIQFLEAPIGDEDAEEAAAEKRGLQRRATPHPSELKVMKRSIEGRRSEACP- 440 450 460 470 480 490 520 530 540 550 560 570 KIAA13 YQEVKAQAGSFPVKNLTQRRPLSARSYSTESYGASQTRPVSARPTMAALLEKIPSDYNLG . ..:: :. ..: :::.: .:. : . :.: . . :. . KIAA01 ---CQPDSGS-PLPAEEEKR-LSAESGLSEDSRPSASTVSEAEPEGPSAEAQGGSQQEAT 500 510 520 530 540 550 580 590 600 610 620 KIAA13 NYGDKPSDNSDLKTRPTPVKGEESC----------GKMPADW-----RQQLLR----HIE . : . . . : . .:: .:.. :. : : ::.:.: : . KIAA01 TAGGEEDAEEDYQ-EPTVHFAEDALLPGDDREIEEGQPEAPWTLPGGRQRLIRKDTPHYK 560 570 580 590 600 610 630 640 650 660 670 KIAA13 AR-RLDRTPSQQSNI-LDNGQEDVSPSGQWNPYPLGRRDVPPDTITKKAGSHIQTLM-GS . .... :. .. . : .:.. :.:. : : .. : . .: .. . :: KIAA01 KHFKISKLPQPEAVVALLQGMQ---PDGEGPVAPGGWHNGPHAPWAPRAQKEEEEEEEGS 620 630 640 650 660 680 690 700 710 720 730 KIAA13 QSLQHRSREQQPYEGNINKVTIQQFQSPLPIQIPSSQATRGPQPGRCLIQTKGQRSMDGY . ... .:.. . . : .. . .. :: ... : . ::. : . KIAA01 PQEEEEEEEEENRAEEEEASTEEEDKEGAVVSAPSVKGVSFDQANNLLIEPA--RIEE-- 670 680 690 700 710 720 740 750 760 770 780 790 KIAA13 PEQFCVRI-EKNPGLGFSISGGISGQGNPFKPSDKGIFVTRVQPDGPASNL-LQPGDKIL :.. . : ... :::.::.:: .:. .:.: .:.:::..::. .:::. .. :::.: KIAA01 -EELTLTILRQTGGLGISIAGG-KGS-TPYKGDDEGIFISRVSEEGPAARAGVRVGDKLL 730 740 750 760 770 780 800 810 820 830 KIAA13 QANGHSFVHMEHEKAVLLLKSFQNTVDLVIQRELTV ..:: .. ::..:: :.. ..:.. . :: : KIAA01 EVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERMVEPENAVTITPLRPEDDYSPRERRG 790 800 810 820 830 840 KIAA01 GGLRLPLLPPESPGPLRQRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGG 850 860 870 880 890 900 831 residues in 1 query sequences 1986674 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:19:25 2008 done: Thu Dec 18 15:19:26 2008 Total Scan time: 0.600 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]