# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj03240.fasta.huge -Q ../query/KIAA1370.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1370, 1107 aa
 vs ./tmplib.24314 library

1986398 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.1559+/-0.00563; mu= 17.4670+/- 0.383
 mean_var=134.1988+/-31.865, 0's: 0 Z-trim: 6  B-trim: 0 in 0/40
 Lambda= 0.110713

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1539  ( 543 res)   fg02356                     ( 543)  836 145.6 1.8e-35


>>KIAA1539  ( 543 res)   fg02356                          (543 aa)
 initn: 847 init1: 570 opt: 836  Z-score: 728.6  bits: 145.6 E(): 1.8e-35
Smith-Waterman score: 836;  54.222% identity (76.889% similar) in 225 aa overlap (881-1105:325-541)

              860       870       880       890       900       910
KIAA13 PVPQRKTQSGCFDLDSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLL
                                     :  ...  : .   :  :    : .: .::
KIAA15 LPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLL
          300       310       320       330       340       350    

              920       930       940       950       960       970
KIAA13 GNFEESVLNYRFDPLGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVI
       ::::::.:  :: : : ..:::::.::::..:: :.:::: :.:..::..:::.:..:..
KIAA15 GNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIV
          360       370       380       390       400       410    

              980       990      1000      1010      1020      1030
KIAA13 TLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVK
        :. ::..:: ::  ::.::::::::.::::::.: .:. :::: :.::::.: : ::: 
KIAA15 DLNPLGRKGYSVPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVG
          420       430       440       450       460       470    

             1040      1050      1060      1070      1080      1090
KIAA13 QEVKRSVNKENIRHTEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYE
       .:     .. :  :   ::: ::.::::.::.::.. :: :.::::::.:.:.:.:  ::
KIAA15 EE-----GNANPTH---RLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYE
               480          490       500       510       520      

             1100       
KIAA13 LKSYTESPTNPQFSPRC
       :.. ::.: ::..::  
KIAA15 LQAVTEAPHNPRYSPLP
        530       540   




1107 residues in 1 query   sequences
1986398 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:19:36 2008 done: Thu Dec 18 15:19:37 2008
 Total Scan time:  0.700 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]