hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00593636/chunk_1/iprscan-20080502-00593636.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1372 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 196.1 5.3e-63 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 197.8 2.4e-56 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00443.19.fs 1/1 193 678 .. 1 318 [] 196.1 5.3e-63 PF00443.19.ls 1/1 193 678 .. 1 318 [] 197.8 2.4e-56 Alignments of top-scoring domains: PF00443.19.fs: domain 1 of 1, from 193 to 678: score 196.1, E = 5.3e-63 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl +g +GL+NlGNTCY NS+LQ+Lf+ ++r+ +l+ ++ KIAA1372 193 TGKIGLINLGNTCYVNSILQALFMASDFRHCVLRL----------TE 229 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++ l + l+ Lf l +++++ ++p+ ++ +++ + fs++ KIAA1372 230 NNSQPLMTKLQWLFGFLEHSqRPAISPENFL--------SASWTPWFSPG 271 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx xxx x mQQDAhEFllfLLdgLhedlnrvnkkpytepess.....dkrpd.kaa.e QQD+ E+l +LLd+Lhe+ + + + ++ ++s++++++++p ++ KIAA1372 272 TQQDCSEYLKYLLDRLHEEEKT-GTRICQKLKQSsspspPEEPPaPSStS 320 RF xxxxxxxxxxxxxxxxxxxxxxx awknhltrnesiitdlFqGqlks........................... +k F+G+ ++ ++ ++ + +++++ ++ + +++ KIAA1372 321 VEK------------MFGGKIVTricclcclnvssreeaftdlslafppp 358 RF .................................................. +++++++ ++ +++++ + ++ +++++ +++++ +++++++++ +++++ KIAA1372 359 ercrrrrlgsvmrpteditarelppptsaqgpgrvgprrqrkhcitedtp 408 RF .................................................. +++ ++ ++++ +++++++++ +++++++++++++++ ++++++++++ KIAA1372 409 ptslyiegldskeaggqssqeeriereeegkeertekeevgeeeestrge 458 RF .................................................. ++++++++ ++++++ +++++++ ++++++++ + +++++ +++++++ KIAA1372 459 gerekeeeveeeeekveketekeaeqekeedslgagthpdaaipsgertc 508 RF xxxxxxxxxx ........................................klkikrLPpv +++++++ + + ++++ + +++ ++++ + ++ ++ + +++ P + KIAA1372 509 gsegsrsvldlvnyflspekltaenryycescaslqdaekVVELSQGPCY 558 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LiihLKRFsyngetglnkKiddkVefPleLdlssycnaelkekevlrkde Li+ L RFs++ +t+++ Ki d V++Pl L l +++ + KIAA1372 559 LILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPLAGGRGQA--------- 599 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx kieklkeerqrdedgnneeepeeeedneegenpptkYeLyaVvvHsGssl Y+L++VvvHsG+s+ KIAA1372 600 ------------------------------------YDLCSVVVHSGVSS 613 RF xxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxx ssGHYiayikk..............kkengkWykfDDekVsevteeevle +sGHY++y++++ ++ + ++ ++ ++++Wy+f+D++Vs ++ e v++ KIAA1372 614 ESGHYYCYAREgaarpaaslgtadrPEPENQWYLFNDTRVSFSSFESVSN 663 RF xxxxxxxxxx .....rsssAYiLFY<-* ++ +++AY+LFY KIAA1372 664 vtsffPKDTAYVLFY 678 PF00443.19.ls: domain 1 of 1, from 193 to 678: score 197.8, E = 2.4e-56 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl +g +GL+NlGNTCY NS+LQ+Lf+ ++r+ +l+ ++ KIAA1372 193 TGKIGLINLGNTCYVNSILQALFMASDFRHCVLRL----------TE 229 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++ l + l+ Lf l +++++ ++p+ ++ +++ + fs++ KIAA1372 230 NNSQPLMTKLQWLFGFLEHSqRPAISPENFL--------SASWTPWFSPG 271 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx xxx x mQQDAhEFllfLLdgLhedlnrvnkkpytepess.....dkrpd.kaa.e QQD+ E+l +LLd+Lhe+ + + + ++ ++s++++++++p ++ KIAA1372 272 TQQDCSEYLKYLLDRLHEEEKT-GTRICQKLKQSsspspPEEPPaPSStS 320 RF xxxxxxxxxxxxxxxxxxxxxxx awknhltrnesiitdlFqGqlks........................... +k F+G+ ++ ++ ++ + +++++ ++ + +++ KIAA1372 321 VEK------------MFGGKIVTricclcclnvssreeaftdlslafppp 358 RF .................................................. +++++++ ++ +++++ + ++ +++++ +++++ +++++++++ +++++ KIAA1372 359 ercrrrrlgsvmrpteditarelppptsaqgpgrvgprrqrkhcitedtp 408 RF .................................................. +++ ++ ++++ +++++++++ +++++++++++++++ ++++++++++ KIAA1372 409 ptslyiegldskeaggqssqeeriereeegkeertekeevgeeeestrge 458 RF .................................................. ++++++++ ++++++ +++++++ ++++++++ + +++++ +++++++ KIAA1372 459 gerekeeeveeeeekveketekeaeqekeedslgagthpdaaipsgertc 508 RF xxxxxxxxxx ........................................klkikrLPpv +++++++ + + ++++ + +++ ++++ + ++ ++ + +++ P + KIAA1372 509 gsegsrsvldlvnyflspekltaenryycescaslqdaekVVELSQGPCY 558 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LiihLKRFsyngetglnkKiddkVefPleLdlssycnaelkekevlrkde Li+ L RFs++ +t+++ Ki d V++Pl L l +++ + KIAA1372 559 LILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPLAGGRGQA--------- 599 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx kieklkeerqrdedgnneeepeeeedneegenpptkYeLyaVvvHsGssl Y+L++VvvHsG+s+ KIAA1372 600 ------------------------------------YDLCSVVVHSGVSS 613 RF xxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxx ssGHYiayikk..............kkengkWykfDDekVsevteeevle +sGHY++y++++ ++ + ++ ++ ++++Wy+f+D++Vs ++ e v++ KIAA1372 614 ESGHYYCYAREgaarpaaslgtadrPEPENQWYLFNDTRVSFSSFESVSN 663 RF xxxxxxxxxx .....rsssAYiLFY<-* ++ +++AY+LFY KIAA1372 664 vtsffPKDTAYVLFY 678 //