hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01011403/chunk_1/iprscan-20080502-01011403.nocrc
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Query sequence: KIAA1373
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00232                                                  65.1    8.7e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00232    1/1     270   396 ..     1   156 []    65.1  8.7e-15

Alignments of top-scoring domains:
SM00232: domain 1 of 1, from 270 to 396: score 65.1, E = 8.7e-15
                   *->kvkvhplvllkilkhaere..gpeevcGvLlGksnkDdkdvdsirvt
                       v++  +++ k+l  ae+++ + +e+cG+L Gk         ++ +t
    KIAA1373   270    CVVLPEDLCHKFLQLAESNtvRGIETCGILCGKLTH-----NEFTIT 311  

                   nsfalpCWdfepnesnddvvnaqeydedyshlmdeelrfvlykkvekdle
                    ++           +++        d++ +++  e++      ++++dl+
    KIAA1373   312 HVIVP---------KQSAG-----PDYCDMENVEELF----NVQDQHDLL 343  

                   iVGWyHShpdegpypsevDvathesyqapieivvvlgfkkvdpirsfsgr
                    +GW+H+hp++++++s+vD++th+syq + +++++ +     p+ +    
    KIAA1373   344 TLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIV---CSPKHKD--- 387  

                   lslgafrltea<-*
                     +g frlt+a   
    KIAA1373   388 --TGIFRLTNA    396  

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