hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01060965/chunk_1/iprscan-20080502-01060965.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1376
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00339.19.ls Arrestin (or S-antigen), N-terminal domain   222.2    1.1e-63   1
PF00339.19.fs Arrestin (or S-antigen), N-terminal domain   220.3      4e-63   1
PF02752.12.ls Arrestin (or S-antigen), C-terminal domain   138.5    1.7e-38   1
PF02752.12.fs Arrestin (or S-antigen), C-terminal domain   136.7    5.9e-38   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00339.19.fs   1/1      32   188 ..     1   175 []   220.3    4e-63
PF00339.19.ls   1/1      32   188 ..     1   175 []   222.2  1.1e-63
PF02752.12.fs   1/1     210   337 ..     1   172 []   136.7  5.9e-38
PF02752.12.ls   1/1     210   337 ..     1   172 []   138.5  1.7e-38

Alignments of top-scoring domains:
PF00339.19.fs: domain 1 of 1, from 32 to 188: score 220.3, E = 4e-63
                   *->ftiyldr.nakpdpvYhpGyVetvsGrVllDetkepikvravkitlk
                      +ti++d+ n+   pvY++G  +tvsGrV+l e++++i+v+++ki+++
    KIAA1376    32    LTISFDClNDSNVPVYSSG--DTVSGRVNL-EVTGEIRVKSLKIHAR 75   

                   GeartgweesevmgrtfrkdLylaeeqiyptvnysgkeeYldtqtrLwgk
                   G+a+++w+es+++g+++ +           t+ny++++eY++++++L+g+
    KIAA1376    76 GHAKVRWTESRNAGSNTAY-----------TQNYTEEVEYFNHKDILIGH 114  

                   kdg.......eneLpaGthefPFsfeLPpncLPsSfeGqhGPDqGKpCgI
                   +  +++++++++++++G+he+ FsfeLP+ +L++SfeG+hG       ++
    KIAA1376   115 ERDddnseegFHTIHSGRHEYAFSFELPQTPLATSFEGRHG-------SV 157  

                   rYevkaelaestdrPrwkfdhkrkkvftVirkldln<-*
                   rY+vkael    +rP w +++k kk+ftV +++d+n   
    KIAA1376   158 RYWVKAEL----HRP-WLLPVKLKKEFTVFEHIDIN    188  

PF00339.19.ls: domain 1 of 1, from 32 to 188: score 222.2, E = 1.1e-63
                   *->ftiyldr.nakpdpvYhpGyVetvsGrVllDetkepikvravkitlk
                      +ti++d+ n+   pvY++G  +tvsGrV+l e++++i+v+++ki+++
    KIAA1376    32    LTISFDClNDSNVPVYSSG--DTVSGRVNL-EVTGEIRVKSLKIHAR 75   

                   GeartgweesevmgrtfrkdLylaeeqiyptvnysgkeeYldtqtrLwgk
                   G+a+++w+es+++g+++ +           t+ny++++eY++++++L+g+
    KIAA1376    76 GHAKVRWTESRNAGSNTAY-----------TQNYTEEVEYFNHKDILIGH 114  

                   kdg.......eneLpaGthefPFsfeLPpncLPsSfeGqhGPDqGKpCgI
                   +  +++++++++++++G+he+ FsfeLP+ +L++SfeG+hG       ++
    KIAA1376   115 ERDddnseegFHTIHSGRHEYAFSFELPQTPLATSFEGRHG-------SV 157  

                   rYevkaelaestdrPrwkfdhkrkkvftVirkldln<-*
                   rY+vkael    +rP w +++k kk+ftV +++d+n   
    KIAA1376   158 RYWVKAEL----HRP-WLLPVKLKKEFTVFEHIDIN    188  

PF02752.12.fs: domain 1 of 1, from 210 to 337: score 136.7, E = 5.9e-38
                   *->sdgpltlevslpkkgYvpGEkIpvtvkidNnSsktvkkikasLvQhv
                      ++gp++l++ +++kgY+pGE I+++++i+N+Ss ++  +ka ++Q+ 
    KIAA1376   210    TSGPISLSAKIERKGYTPGESIQIFAEIENCSS-RMVVPKAAIYQTQ 255  

                   tyvaysnakykktVaeeeeegsgcpvapgssglskvkklepllvankekg
                    ++a++                             ++k++++lvan++++
    KIAA1376   256 AFYAKG-----------------------------KMKEVKQLVANLRGE 276  

                   gvaldgklkfegdtlakvliPstlptegtlkecpgdlIqVsYklkVklsl
                   ++  + + +++g+ l   +iP++ p+   + +c +  I+V+Y+l V+++ 
    KIAA1376   277 SLSSGKTETWNGKLL---KIPPVSPS---ILDCSI--IRVEYSLMVYVDI 318  

                   sgglgdglgselklelPitigtvpp<-*
                   +      ++ +l l+lP++igt+p+   
    KIAA1376   319 P------GAMDLFLNLPLVIGTIPL    337  

PF02752.12.ls: domain 1 of 1, from 210 to 337: score 138.5, E = 1.7e-38
                   *->sdgpltlevslpkkgYvpGEkIpvtvkidNnSsktvkkikasLvQhv
                      ++gp++l++ +++kgY+pGE I+++++i+N+Ss ++  +ka ++Q+ 
    KIAA1376   210    TSGPISLSAKIERKGYTPGESIQIFAEIENCSS-RMVVPKAAIYQTQ 255  

                   tyvaysnakykktVaeeeeegsgcpvapgssglskvkklepllvankekg
                    ++a++                             ++k++++lvan++++
    KIAA1376   256 AFYAKG-----------------------------KMKEVKQLVANLRGE 276  

                   gvaldgklkfegdtlakvliPstlptegtlkecpgdlIqVsYklkVklsl
                   ++  + + +++g+ l   +iP++ p+   + +c +  I+V+Y+l V+++ 
    KIAA1376   277 SLSSGKTETWNGKLL---KIPPVSPS---ILDCSI--IRVEYSLMVYVDI 318  

                   sgglgdglgselklelPitigtvpp<-*
                   +      ++ +l l+lP++igt+p+   
    KIAA1376   319 P------GAMDLFLNLPLVIGTIPL    337  

//