hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01092821/chunk_1/iprscan-20080502-01092821.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1378 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 317.1 3e-92 6 PF01344.15.fs Kelch motif 310.0 4e-90 6 PF07707.5.ls BTB And C-terminal Kelch 149.9 6e-42 1 PF07707.5.fs BTB And C-terminal Kelch 148.0 2.4e-41 1 PF07646.5.ls Kelch motif 126.3 7.7e-35 6 PF07646.5.fs Kelch motif 118.6 1.6e-32 6 PF00651.21.ls BTB/POZ domain 116.9 5.5e-32 1 PF00651.21.fs BTB/POZ domain 115.1 1.3e-31 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 65 172 .. 1 135 [] 115.1 1.3e-31 PF00651.21.ls 1/1 65 172 .. 1 135 [] 116.9 5.5e-32 PF07707.5.ls 1/1 177 279 .. 1 103 [] 149.9 6e-42 PF07707.5.fs 1/1 177 279 .. 1 103 [] 148.0 2.4e-41 PF01344.15.ls 1/6 315 361 .. 1 45 [] 27.5 4.5e-05 PF01344.15.fs 1/6 326 361 .. 12 45 .] 30.4 8.1e-08 PF01344.15.fs 2/6 363 408 .. 1 45 [] 59.9 3.3e-16 PF07646.5.ls 2/6 363 408 .. 1 54 [] 20.2 0.0068 PF01344.15.ls 2/6 363 408 .. 1 45 [] 61.9 1.9e-15 PF07646.5.fs 2/6 363 408 .. 1 54 [] 18.4 0.00039 PF01344.15.fs 3/6 410 455 .. 1 45 [] 58.5 8.5e-16 PF07646.5.ls 3/6 410 455 .. 1 54 [] 28.5 2.1e-05 PF07646.5.fs 3/6 410 455 .. 1 54 [] 26.7 2.1e-06 PF01344.15.ls 3/6 410 455 .. 1 45 [] 60.5 5e-15 PF07646.5.ls 4/6 457 502 .. 1 54 [] 19.8 0.0092 PF01344.15.fs 4/6 457 502 .. 1 45 [] 50.8 1.3e-13 PF01344.15.ls 4/6 457 502 .. 1 45 [] 52.8 1e-12 PF07646.5.fs 4/6 457 502 .. 1 54 [] 17.9 0.00052 PF01344.15.fs 5/6 504 549 .. 1 45 [] 60.4 2.4e-16 PF07646.5.fs 5/6 504 549 .. 1 54 [] 26.1 3.1e-06 PF01344.15.ls 5/6 504 549 .. 1 45 [] 62.4 1.3e-15 PF07646.5.ls 5/6 504 549 .. 1 54 [] 27.9 3.2e-05 PF07646.5.fs 6/6 551 596 .. 1 54 [] 24.5 8.3e-06 PF01344.15.fs 6/6 551 596 .. 1 45 [] 49.8 2.5e-13 PF01344.15.ls 6/6 551 596 .. 1 45 [] 51.8 2.1e-12 PF07646.5.ls 6/6 551 596 .. 1 54 [] 26.4 9.5e-05 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 65 to 172: score 115.1, E = 1.3e-31 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l ++++gelcDVtL+vg k + +HK+vLa+ pYF+a+ KIAA1378 65 LLRFYENGELCDVTLKVG--------SKLISCHKLVLACVIPYFRAM 103 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F++ ++e++++ ie++d++ ++ e l++f Y+++l++t KIAA1378 104 FLSE------MAEAKQT-LIEIRDFDGDAIEDLVKFVYSSRLTLT----- 141 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +nv+ lL+aA + lq++ + +aC+e+++ + KIAA1378 142 ------VDNVQPLLYAA-CILQVELVARACCEYMKLHF 172 PF00651.21.ls: domain 1 of 1, from 65 to 172: score 116.9, E = 5.5e-32 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l ++++gelcDVtL+vg k + +HK+vLa+ pYF+a+ KIAA1378 65 LLRFYENGELCDVTLKVG--------SKLISCHKLVLACVIPYFRAM 103 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F++ ++e++++ ie++d++ ++ e l++f Y+++l++t KIAA1378 104 FLSE------MAEAKQT-LIEIRDFDGDAIEDLVKFVYSSRLTLT----- 141 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +nv+ lL+aA + lq++ + +aC+e+++ + KIAA1378 142 ------VDNVQPLLYAA-CILQVELVARACCEYMKLHF 172 PF07707.5.ls: domain 1 of 1, from 177 to 279: score 149.9, E = 6e-42 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CL++r fA+ ++ +L+++Ad++++ +F+eV++ e+F + s+++L++ KIAA1378 177 CLAVRAFAESHNRIDLMDMADQYACDHFTEVVECEDFVSVSPQHLHK 223 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lLss++Ln+++E +V++A+++W+ ++++ k+l e L++VRLpLL+ ++ KIAA1378 224 LLSSSDLNIENEKQVYNAAIKWLLANPQHHSKWLDETLAQVRLPLLPVDF 273 Llevve<-* L+ vv+ KIAA1378 274 LMGVVA 279 PF07707.5.fs: domain 1 of 1, from 177 to 279: score 148.0, E = 2.4e-41 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CL++r fA+ ++ +L+++Ad++++ +F+eV++ e+F + s+++L++ KIAA1378 177 CLAVRAFAESHNRIDLMDMADQYACDHFTEVVECEDFVSVSPQHLHK 223 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lLss++Ln+++E +V++A+++W+ ++++ k+l e L++VRLpLL+ ++ KIAA1378 224 LLSSSDLNIENEKQVYNAAIKWLLANPQHHSKWLDETLAQVRLPLLPVDF 273 Llevve<-* L+ vv+ KIAA1378 274 LMGVVA 279 PF01344.15.ls: domain 1 of 6, from 315 to 361: score 27.5, E = 4.5e-05 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp + g+++++GG+ g++ +++s+e+Y+ +n+W ++p+m+ KIAA1378 315 SIRTTPRKHTAGVLFCVGGRGGsgDPFRSIECYSINKNSWFFGPEMN 361 <-* KIAA1378 - - PF01344.15.fs: domain 1 of 6, from 326 to 361: score 30.4, E = 8.1e-08 *->gkiYviGGydg..qslnsvevYDpetntWtklpsmp<-* g+++++GG+ g++ +++s+e+Y+ +n+W ++p+m+ KIAA1378 326 GVLFCVGGRGGsgDPFRSIECYSINKNSWFFGPEMN 361 PF01344.15.fs: domain 2 of 6, from 363 to 408: score 59.9, E = 3.3e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++gv +++gk+Y++GG+dg++ l s e++Dp tn+W + +sm+ KIAA1378 363 RRRHVGVISVEGKVYAVGGHDGnEHLGSMEMFDPLTNKWMMKASMN 408 -* KIAA1378 - - PF07646.5.ls: domain 2 of 6, from 363 to 408: score 20.2, E = 0.0068 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r ++ +++++gk+y vGG+ +g+e + ++ +dp tn+W KIAA1378 363 RRRHVGVISVEGKVYAVGGH--------DGNEHLGSMEMFDPLTNKW 401 eklpalp<-* +++ KIAA1378 402 MMKASMN 408 PF01344.15.ls: domain 2 of 6, from 363 to 408: score 61.9, E = 1.9e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++gv +++gk+Y++GG+dg++ l s e++Dp tn+W + +sm+ KIAA1378 363 RRRHVGVISVEGKVYAVGGHDGnEHLGSMEMFDPLTNKWMMKASMN 408 -* KIAA1378 - - PF07646.5.fs: domain 2 of 6, from 363 to 408: score 18.4, E = 0.00039 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r ++ +++++gk+y vGG+ +g+e + ++ +dp tn+W KIAA1378 363 RRRHVGVISVEGKVYAVGGH--------DGNEHLGSMEMFDPLTNKW 401 eklpalp<-* +++ KIAA1378 402 MMKASMN 408 PF01344.15.fs: domain 3 of 6, from 410 to 455: score 58.5, E = 8.5e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g + ++l+g iY+iGG d+++++n+ve+YD e+++W+ +++m+ KIAA1378 410 KRRGIALASLGGPIYAIGGLDDnTCFNDVERYDIESDQWSTVAPMN 455 -* KIAA1378 - - PF07646.5.ls: domain 3 of 6, from 410 to 455: score 28.5, E = 2.1e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r + a++++gg +y +GG +++ ++d+ ++d e+ +W KIAA1378 410 KRRGIALASLGGPIYAIGGL--------DDNTCFNDVERYDIESDQW 448 eklpalp<-* + ++++ KIAA1378 449 STVAPMN 455 PF07646.5.fs: domain 3 of 6, from 410 to 455: score 26.7, E = 2.1e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r + a++++gg +y +GG +++ ++d+ ++d e+ +W KIAA1378 410 KRRGIALASLGGPIYAIGGL--------DDNTCFNDVERYDIESDQW 448 eklpalp<-* + ++++ KIAA1378 449 STVAPMN 455 PF01344.15.ls: domain 3 of 6, from 410 to 455: score 60.5, E = 5e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g + ++l+g iY+iGG d+++++n+ve+YD e+++W+ +++m+ KIAA1378 410 KRRGIALASLGGPIYAIGGLDDnTCFNDVERYDIESDQWSTVAPMN 455 -* KIAA1378 - - PF07646.5.ls: domain 4 of 6, from 457 to 502: score 19.8, E = 0.0092 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr+++ sv + + +y vGG +g+ s+s++ ++dp +W KIAA1378 457 PRGGVGSVALVNHVYAVGGN--------DGMASLSSVERYDPHLDKW 495 eklpalp<-* +++ ++ KIAA1378 496 IEVKEMG 502 PF01344.15.fs: domain 4 of 6, from 457 to 502: score 50.8, E = 1.3e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR g+g+v+l +++Y++GG dg sl+sve+YDp ++W ++ +m+ KIAA1378 457 PRGGVGSVALVNHVYAVGGNDGmASLSSVERYDPHLDKWIEVKEMG 502 -* KIAA1378 - - PF01344.15.ls: domain 4 of 6, from 457 to 502: score 52.8, E = 1e-12 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR g+g+v+l +++Y++GG dg sl+sve+YDp ++W ++ +m+ KIAA1378 457 PRGGVGSVALVNHVYAVGGNDGmASLSSVERYDPHLDKWIEVKEMG 502 -* KIAA1378 - - PF07646.5.fs: domain 4 of 6, from 457 to 502: score 17.9, E = 0.00052 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr+++ sv + + +y vGG +g+ s+s++ ++dp +W KIAA1378 457 PRGGVGSVALVNHVYAVGGN--------DGMASLSSVERYDPHLDKW 495 eklpalp<-* +++ ++ KIAA1378 496 IEVKEMG 502 PF01344.15.fs: domain 5 of 6, from 504 to 549: score 60.4, E = 2.4e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g gv l+g++Yv+GG+d++++l+sve+YDp++n+W +++ ++ KIAA1378 504 RRAGNGVSKLHGCLYVVGGFDDnSPLSSVERYDPRSNKWDYVAALT 549 -* KIAA1378 - - PF07646.5.fs: domain 5 of 6, from 504 to 549: score 26.1, E = 3.1e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++ + g+lyvvGG+ ++++ +s++ ++dp++n+W KIAA1378 504 RRAGNGVSKLHGCLYVVGGF--------DDNSPLSSVERYDPRSNKW 542 eklpalp<-* ++++al KIAA1378 543 DYVAALT 549 PF01344.15.ls: domain 5 of 6, from 504 to 549: score 62.4, E = 1.3e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g gv l+g++Yv+GG+d++++l+sve+YDp++n+W +++ ++ KIAA1378 504 RRAGNGVSKLHGCLYVVGGFDDnSPLSSVERYDPRSNKWDYVAALT 549 -* KIAA1378 - - PF07646.5.ls: domain 5 of 6, from 504 to 549: score 27.9, E = 3.2e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++ + g+lyvvGG+ ++++ +s++ ++dp++n+W KIAA1378 504 RRAGNGVSKLHGCLYVVGGF--------DDNSPLSSVERYDPRSNKW 542 eklpalp<-* ++++al KIAA1378 543 DYVAALT 549 PF07646.5.fs: domain 6 of 6, from 551 to 596: score 24.5, E = 8.3e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr+++ ++++ gk++ vGG+ ng+ +++++ +dp n+W KIAA1378 551 PRGGVGIATVMGKIFAVGGH--------NGNAYLNTVEAFDPVLNRW 589 eklpalp<-* e + ++ KIAA1378 590 ELVGSVS 596 PF01344.15.fs: domain 6 of 6, from 551 to 596: score 49.8, E = 2.5e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR g+g++++ gki+++GG++g+ +ln+ve++Dp+ n+W+ + s + KIAA1378 551 PRGGVGIATVMGKIFAVGGHNGnAYLNTVEAFDPVLNRWELVGSVS 596 -* KIAA1378 - - PF01344.15.ls: domain 6 of 6, from 551 to 596: score 51.8, E = 2.1e-12 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR g+g++++ gki+++GG++g+ +ln+ve++Dp+ n+W+ + s + KIAA1378 551 PRGGVGIATVMGKIFAVGGHNGnAYLNTVEAFDPVLNRWELVGSVS 596 -* KIAA1378 - - PF07646.5.ls: domain 6 of 6, from 551 to 596: score 26.4, E = 9.5e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr+++ ++++ gk++ vGG+ ng+ +++++ +dp n+W KIAA1378 551 PRGGVGIATVMGKIFAVGGH--------NGNAYLNTVEAFDPVLNRW 589 eklpalp<-* e + ++ KIAA1378 590 ELVGSVS 596 //